Crystal structure analysis of the anti-arsonate germline antibody 36-65 in complex with a phage display derived dodecapeptide KLASIPTHTSPL
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B | d2a6ib3 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | V set domains (antibody variable domain-like) | Immunoglobulin heavy chain variable domain, VH | (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
| B | d2a6ib2 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | C1 set domains (antibody constant domain-like) | Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma | (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | HMG_CoA_synt_N | e2a6iA1 | A: a/b three-layered sandwiches | X: HTH | H: Nudix | T: winged helix domain | F: HMG_CoA_synt_N | ECOD (v294.1) |
| B | Copper-bind | e2a6iB1 | A: a/b three-layered sandwiches | X: Phage tail fiber protein trimerization domain | H: beta-Prism I | T: beta-Prism I | F: Copper-bind | ECOD (v294.1) |
| B | HMG_CoA_synt_N | e2a6iB2 | A: a/b three-layered sandwiches | X: HTH | H: Nudix | T: winged helix domain | F: HMG_CoA_synt_N | ECOD (v294.1) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| A | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
| B | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
IMGT Antibody Annotation IMGT Database Homepage
| Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
|---|---|---|---|---|---|---|---|---|
| 36-65 | L-KAPPA | Mus musculus (house mouse) | IGKV10-96*01, IGKJ1*01, IGKJ1*02, IGKJ2*01, IGKC*01, IGKC*02 | V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA | IG | FAB-GAMMA-1_KAPPA | IMGT (202615-0) | |
| 36-65 | VH-CH1 | Mus musculus (house mouse) | IGHV1-58*01, IGHJ2*01, IGHG1*01 | V-DOMAIN VH, C-DOMAIN CH1 | IG | FAB-GAMMA-1_KAPPA | IMGT (202615-0) |
