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 1ZDX | pdb_00001zdx

Solution Structure of the type 1 pilus assembly platform FimD(25-125)

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad1zdxa1 All beta proteins FimD N-terminal domain-like FimD N-terminal domain-like Usher N-domain Outer membrane usher protein FimD (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyFimD/Slr0280 N-terminal domain-like 8039575 3001001 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ARhve1zdxA1 A: alpha arraysX: Phage tail fiber protein trimerization domainH: Phage tail fiber protein trimerization domainT: Phage tail fiber protein trimerization domainF: RhvECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.10.20.410 Alpha Beta Roll Ubiquitin-like (UB roll) PapC, N-terminal domainCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF13954PapC N-terminal domain (PapC_N)PapC N-terminal domainThe PapC N-terminal domain is a structural domain found at the N-terminus of the E. coli PapC protein. Pili are assembled using the chaperone usher system. In E.coli this is composed of the chaperone PapD and the usher PapC. This domain represents th ...The PapC N-terminal domain is a structural domain found at the N-terminus of the E. coli PapC protein. Pili are assembled using the chaperone usher system. In E.coli this is composed of the chaperone PapD and the usher PapC. This domain represents the N-terminal domain from PapC and its homologues. This domain is involved in substrate binding [1].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Outer membrane usher protein fimD

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR042186Outer membrane usher protein FimD, plug domainHomologous Superfamily
IPR037224PapC, N-terminal domain superfamilyHomologous Superfamily
IPR018030Fimbrial membrane usher, conserved siteConserved Site
IPR025885PapC, N-terminal domainDomain
IPR043142PapC-like, C-terminal domain superfamilyHomologous Superfamily
IPR025949PapC-like, C-terminal domainDomain
IPR000015Outer membrane usher proteinFamily