1Z5B
Topoisomerase VI-B, ADP AlF4- bound dimer form
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | GHKL (Gyrase, Hsp90, Histidine Kinase, MutL) domain-like | 8003716 | 3000091 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8003724 | 3000100 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | S13-like H2TH domain | 8003720 | 3000053 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | GHKL (Gyrase, Hsp90, Histidine Kinase, MutL) domain-like | 8003716 | 3000091 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | S13-like H2TH domain | 8003720 | 3000053 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8003724 | 3000100 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | FbpA_2nd_1 | e1z5bA1 | A: alpha arrays | X: HhH/H2TH | H: H2TH (From Topology) | T: H2TH | F: FbpA_2nd_1 | ECOD (1.6) |
A | Topo-VIb_trans | e1z5bA2 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: Topo-VIb_trans | ECOD (1.6) |
A | HATPase_c_3 | e1z5bA3 | A: a+b two layers | X: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like | H: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase (From Topology) | T: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | F: HATPase_c_3 | ECOD (1.6) |
B | FbpA_2nd_1 | e1z5bB1 | A: alpha arrays | X: HhH/H2TH | H: H2TH (From Topology) | T: H2TH | F: FbpA_2nd_1 | ECOD (1.6) |
B | Topo-VIb_trans | e1z5bB2 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: Topo-VIb_trans | ECOD (1.6) |
B | HATPase_c_3 | e1z5bB3 | A: a+b two layers | X: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like | H: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase (From Topology) | T: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | F: HATPase_c_3 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.565.10 | Alpha Beta | 2-Layer Sandwich | Heat Shock Protein 90 | Histidine kinase-like ATPase, C-terminal domain | CATH (4.3.0) |
A | 1.10.8.50 | Mainly Alpha | Orthogonal Bundle | Helicase, Ruva Protein | domain 3 | CATH (4.3.0) |
A | 3.30.230.10 | Alpha Beta | 2-Layer Sandwich | Ribosomal Protein S5 | domain 2 | CATH (4.3.0) |
B | 3.30.565.10 | Alpha Beta | 2-Layer Sandwich | Heat Shock Protein 90 | Histidine kinase-like ATPase, C-terminal domain | CATH (4.3.0) |
B | 1.10.8.50 | Mainly Alpha | Orthogonal Bundle | Helicase, Ruva Protein | domain 3 | CATH (4.3.0) |
B | 3.30.230.10 | Alpha Beta | 2-Layer Sandwich | Ribosomal Protein S5 | domain 2 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02518 | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | This family represents the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90. | Domain | |
PF09239 | Topoisomerase VI B subunit, transducer (Topo-VIb_trans) | Topoisomerase VI B subunit, transducer | Members of this family adopt a structure consisting of a four-stranded beta-sheet backed by three alpha-helices, the last of which is over 50 amino acids long and extends from the body of the protein by several turns. This domain has been proposed to ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR003594 | Histidine kinase/HSP90-like ATPase domain | Domain | |
IPR005734 | DNA topoisomerase VI, subunit B | Family | |
IPR050761 | DNA topoisomerase VI subunit B | Family | |
IPR015320 | DNA topoisomerase VI, subunit B, transducer | Domain |