1Z1B
Crystal structure of a lambda integrase dimer bound to a COC' core site
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
F [auth A] | d1z1ba1 | Alpha and beta proteins (a+b) | DNA-binding domain | DNA-binding domain | lambda integrase N-terminal domain | lambda integrase N-terminal domain | (Lambdavirus lambda ) [TaxId: 10710 ], | SCOPe (2.08) |
F [auth A] | d1z1ba2 | Alpha and beta proteins (a+b) | DNA breaking-rejoining enzymes | DNA breaking-rejoining enzymes | Lambda integrase-like, catalytic core | Integrase (Int) | (Lambdavirus lambda ) [TaxId: 10710 ], | SCOPe (2.08) |
G [auth B] | d1z1bb1 | Alpha and beta proteins (a+b) | DNA-binding domain | DNA-binding domain | lambda integrase N-terminal domain | lambda integrase N-terminal domain | (Lambdavirus lambda ) [TaxId: 10710 ], | SCOPe (2.08) |
G [auth B] | d1z1bb2 | Alpha and beta proteins (a+b) | DNA breaking-rejoining enzymes | DNA breaking-rejoining enzymes | Lambda integrase-like, catalytic core | Integrase (Int) | (Lambdavirus lambda ) [TaxId: 10710 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
F [auth A] | SCOP2 Family | lambda integrase DNA-binding domain-like | 8022701 | 4002502 | SCOP2 (2021-05-27) |
F [auth A] | SCOP2 Family | lambda integrase-like clamp domain-like | 8091467 | 4001040 | SCOP2 (2021-05-27) |
F [auth A] | SCOP2 Superfamily | DNA-binding domain | 8035081 | 3000183 | SCOP2 (2021-05-27) |
F [auth A] | SCOP2 Superfamily | lambda integrase clamp domain-like | 8091468 | 3000550 | SCOP2 (2021-05-27) |
F [auth A] | SCOP2B Superfamily | DNA breaking-rejoining enzymes | 8036952 | 3001127 | SCOP2B (2021-05-27) |
G [auth B] | SCOP2B Superfamily | DNA-binding domain | 8035081 | 3000183 | SCOP2B (2021-05-27) |
G [auth B] | SCOP2B Superfamily | lambda integrase clamp domain-like | 8091468 | 3000550 | SCOP2B (2021-05-27) |
G [auth B] | SCOP2B Superfamily | DNA breaking-rejoining enzymes | 8036952 | 3001127 | SCOP2B (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
F [auth A] | PF00589 | e1z1bA2 | A: alpha arrays | X: HTH | H: HTH | T: DNA breaking-rejoining enzymes | F: PF00589 | ECOD (1.6) |
F [auth A] | PF02899 | e1z1bA3 | A: alpha arrays | X: lambda integrase-N-like | H: lambda integrase-N (From Topology) | T: lambda integrase-N | F: PF02899 | ECOD (1.6) |
F [auth A] | PF09003 | e1z1bA4 | A: a+b two layers | X: DNA-binding domain | H: GCC-box binding domain-like (From Topology) | T: GCC-box binding domain-like | F: PF09003 | ECOD (1.6) |
G [auth B] | PF00589 | e1z1bB4 | A: alpha arrays | X: HTH | H: HTH | T: DNA breaking-rejoining enzymes | F: PF00589 | ECOD (1.6) |
G [auth B] | PF02899 | e1z1bB3 | A: alpha arrays | X: lambda integrase-N-like | H: lambda integrase-N (From Topology) | T: lambda integrase-N | F: PF02899 | ECOD (1.6) |
G [auth B] | PF09003 | e1z1bB1 | A: a+b two layers | X: DNA-binding domain | H: GCC-box binding domain-like (From Topology) | T: GCC-box binding domain-like | F: PF09003 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
F [auth A] | 3.30.160.60 | Alpha Beta | 2-Layer Sandwich | Double Stranded RNA Binding Domain | Classic Zinc Finger | CATH (4.3.0) |
F [auth A] | 1.10.150.130 | Mainly Alpha | Orthogonal Bundle | DNA polymerase | domain 1 | CATH (4.3.0) |
F [auth A] | 1.10.443.10 | Mainly Alpha | Orthogonal Bundle | hpI Integrase | Chain A | CATH (4.3.0) |
G [auth B] | 3.30.160.60 | Alpha Beta | 2-Layer Sandwich | Double Stranded RNA Binding Domain | Classic Zinc Finger | CATH (4.3.0) |
G [auth B] | 1.10.150.130 | Mainly Alpha | Orthogonal Bundle | DNA polymerase | domain 1 | CATH (4.3.0) |
G [auth B] | 1.10.443.10 | Mainly Alpha | Orthogonal Bundle | hpI Integrase | Chain A | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
F [auth A], G [auth B] | PF00589 | Phage integrase family (Phage_integrase) | Phage integrase family | - | Family |
F [auth A], G [auth B] | PF02899 | Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_1) | Phage integrase, N-terminal SAM-like domain | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
F [auth A], G [auth B] | IPR011010 | DNA breaking-rejoining enzyme, catalytic core | Homologous Superfamily |
F [auth A], G [auth B] | IPR010998 | Integrase/recombinase, N-terminal | Homologous Superfamily |
F [auth A], G [auth B] | IPR015094 | Integrase, lambda-type, N-terminal DNA-binding | Domain |
F [auth A], G [auth B] | IPR044068 | Core-binding (CB) domain | Domain |
F [auth A], G [auth B] | IPR002104 | Integrase, catalytic domain | Domain |
F [auth A], G [auth B] | IPR004107 | Integrase, SAM-like, N-terminal | Domain |
F [auth A], G [auth B] | IPR013762 | Integrase-like, catalytic domain superfamily | Homologous Superfamily |
F [auth A], G [auth B] | IPR016177 | DNA-binding domain superfamily | Homologous Superfamily |
Protein Modification Annotation
Modified Residue(s) | ||
---|---|---|
Chain | Residue(s) | Description |
F [auth A], G [auth B] | PTR | Parent Component: TYR :  AA0039 :  O4'-phospho-L-tyrosine MOD:00048 |