1YRB
PAB0955 crystal structure : a GTPase in GDP and Mg bound form from Pyrococcus abyssi
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1yrba2 | Alpha and beta proteins (a/b) | P-loop containing nucleoside triphosphate hydrolases | P-loop containing nucleoside triphosphate hydrolases | Nitrogenase iron protein-like | ATP(GTP)-binding protein PAB0955 | (Pyrococcus abyssi ) [TaxId: 29292 ], | SCOPe (2.08) |
A | d1yrba3 | Artifacts | Tags | Tags | Tags | N-terminal Tags | (Pyrococcus abyssi ) [TaxId: 29292 ], | SCOPe (2.08) |
B | d1yrbb2 | Alpha and beta proteins (a/b) | P-loop containing nucleoside triphosphate hydrolases | P-loop containing nucleoside triphosphate hydrolases | Nitrogenase iron protein-like | ATP(GTP)-binding protein PAB0955 | (Pyrococcus abyssi ) [TaxId: 29292 ], | SCOPe (2.08) |
B | d1yrbb3 | Artifacts | Tags | Tags | Tags | N-terminal Tags | (Pyrococcus abyssi ) [TaxId: 29292 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | PAB0955-like | 8017909 | 4003992 | SCOP2 (2021-05-27) |
A | SCOP2 Superfamily | Simibi-like P-loop NTPases | 8017910 | 3002018 | SCOP2 (2021-05-27) |
B | SCOP2B Superfamily | Simibi-like P-loop NTPases | 8017910 | 3002018 | SCOP2B (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF03029 | e1yrbA1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF03029 | ECOD (1.6) |
B | PF03029 | e1yrbB1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF03029 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (4.3.0) |
B | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF03029 | Conserved hypothetical ATP binding protein (ATP_bind_1) | Conserved hypothetical ATP binding protein | Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR030230 | GPN-loop GTPase 1 | Family | |
IPR004130 | GPN-loop GTPase | Family | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily |