Structure of Cytosolic Protein of Unknown Function YutE from Bacillus subtilis


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BSigma_1_2e1ylmB1 A: beta barrelsX: HTHH: NudixT: winged helix domainF: Sigma_1_2ECOD (v294.2)
ATctex-1e1ylmA1 A: beta barrelsX: Globin-likeH: Ring-building motif I in type III secretion systemT: Ring-building motif I in type III secretion systemF: Tctex-1ECOD (v294.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B1.20.120.580 Mainly Alpha Up-down Bundle Four Helix Bundle (Hemerythrin (Met), subunit A) bsu32300-likeCATH (4.3.0)
A1.20.120.580 Mainly Alpha Up-down Bundle Four Helix Bundle (Hemerythrin (Met), subunit A) bsu32300-likeCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF01934Ribonuclease HepT-like (HepT-like)Ribonuclease HepT-likeThis family includes the toxic component HepT of a type II toxin-antitoxin (TA) system, which has RNase activity. These proteins contain a HEPN (higher eukaryotes and prokaryotes nucleotide-binding) domain and are neutralised through tri-AMPylation b ...This family includes the toxic component HepT of a type II toxin-antitoxin (TA) system, which has RNase activity. These proteins contain a HEPN (higher eukaryotes and prokaryotes nucleotide-binding) domain and are neutralised through tri-AMPylation by the cognate antitoxin MntA, containing a MNT (minimal nucleotidyltransferase) domain [1, 2, 3]. HepT-MnA form an heterooctamer (at a 2:6 ratio), a rare organisation for this kind of TA systems. HepT dimerises and enables the formation of a deep cleft at the HEPN-domain interface, containing the RX4-6H motif (where X is any amino acid and the residue immediately after the conserved R is typically a polar amino acid) as the active site that functions as an RNA-cleaving RNase. This type II TA system regulates cell motility and confers plasmid stability [2]. Due to the prevalence of these HEPN/MNT modules in bacteria and archaea, it has been suggested that these TA systems may also play a role in the environmental adaptation to extreme habitats [3].
Domain

InterPro: Protein Family Classification InterPro Database Homepage