1YJG
Variable Small Protein 1 of Borrelia turicatae (VspA or Vsp1)
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1yjga_ | All alpha proteins | Four-helical up-and-down bundle | Outer surface protein C (OspC) | automated matches | automated matches | (Borrelia turicatae ) [TaxId: 142 ], | SCOPe (2.08) |
B | d1yjgb_ | All alpha proteins | Four-helical up-and-down bundle | Outer surface protein C (OspC) | automated matches | automated matches | (Borrelia turicatae ) [TaxId: 142 ], | SCOPe (2.08) |
C [auth D] | d1yjgd_ | All alpha proteins | Four-helical up-and-down bundle | Outer surface protein C (OspC) | automated matches | automated matches | (Borrelia turicatae ) [TaxId: 142 ], | SCOPe (2.08) |
D [auth E] | d1yjge_ | All alpha proteins | Four-helical up-and-down bundle | Outer surface protein C (OspC) | automated matches | automated matches | (Borrelia turicatae ) [TaxId: 142 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Outer surface protein C (OspC) | 8088450 | 3001976 | SCOP2B (2021-05-27) |
B | SCOP2B Superfamily | Outer surface protein C (OspC) | 8088450 | 3001976 | SCOP2B (2021-05-27) |
C [auth D] | SCOP2B Superfamily | Outer surface protein C (OspC) | 8088450 | 3001976 | SCOP2B (2021-05-27) |
D [auth E] | SCOP2B Superfamily | Outer surface protein C (OspC) | 8088450 | 3001976 | SCOP2B (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF01441 | e1yjgA1 | A: alpha bundles | X: Four-helical up-and-down bundle | H: Outer surface protein C (OspC) (From Topology) | T: Outer surface protein C (OspC) | F: PF01441 | ECOD (1.6) |
B | PF01441 | e1yjgB1 | A: alpha bundles | X: Four-helical up-and-down bundle | H: Outer surface protein C (OspC) (From Topology) | T: Outer surface protein C (OspC) | F: PF01441 | ECOD (1.6) |
C [auth D] | PF01441 | e1yjgD1 | A: alpha bundles | X: Four-helical up-and-down bundle | H: Outer surface protein C (OspC) (From Topology) | T: Outer surface protein C (OspC) | F: PF01441 | ECOD (1.6) |
D [auth E] | PF01441 | e1yjgE1 | A: alpha bundles | X: Four-helical up-and-down bundle | H: Outer surface protein C (OspC) (From Topology) | T: Outer surface protein C (OspC) | F: PF01441 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.20.120.240 | Mainly Alpha | Up-down Bundle | Four Helix Bundle (Hemerythrin (Met), subunit A) | Lipoprotein, type 6 | CATH (4.3.0) |
B | 1.20.120.240 | Mainly Alpha | Up-down Bundle | Four Helix Bundle (Hemerythrin (Met), subunit A) | Lipoprotein, type 6 | CATH (4.3.0) |
C [auth D] | 1.20.120.240 | Mainly Alpha | Up-down Bundle | Four Helix Bundle (Hemerythrin (Met), subunit A) | Lipoprotein, type 6 | CATH (4.3.0) |
D [auth E] | 1.20.120.240 | Mainly Alpha | Up-down Bundle | Four Helix Bundle (Hemerythrin (Met), subunit A) | Lipoprotein, type 6 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, B, C [auth D], D [auth E] | PF01441 | Lipoprotein (Lipoprotein_6) | Lipoprotein | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
A, B, C [auth D], D [auth E] | Surface protein VspA | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, B, C [auth D], D [auth E] | IPR001800 | Lipoprotein, OspC-type | Family |
A, B, C [auth D], D [auth E] | IPR036437 | Outer surface protein C-like superfamily | Homologous Superfamily |