1YIO
Crystallographic structure of response regulator StyR from Pseudomonas fluorescens
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1yioa1 | All alpha proteins | DNA/RNA-binding 3-helical bundle | C-terminal effector domain of the bipartite response regulators | GerE-like (LuxR/UhpA family of transcriptional regulators) | Response regulatory protein StyR, C-terminal domain | (Pseudomonas fluorescens ) [TaxId: 294 ], | SCOPe (2.08) |
A | d1yioa2 | Alpha and beta proteins (a/b) | Flavodoxin-like | CheY-like | CheY-related | Response regulatory protein StyR, N-terminal domain | (Pseudomonas fluorescens ) [TaxId: 294 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | GerE-like (LuxR/UhpA family of transcriptional regulators) | 8022183 | 4000720 | SCOP2 (2022-06-29) |
A | SCOP2 Family | CheY-related | 8022184 | 4003632 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | C-terminal effector domain of the bipartite response regulators | 8034563 | 3001179 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | CheY-like | 8034564 | 3001156 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | GerE | e1yioA1 | A: alpha arrays | X: HTH | H: HTH | T: tetra-helical, LuxR-like | F: GerE | ECOD (1.6) |
A | Response_reg | e1yioA2 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: CheY-like | F: Response_reg | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.50.2300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Response regulator | CATH (4.3.0) |
A | 1.10.10.10 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00072 | Response regulator receiver domain (Response_reg) | Response regulator receiver domain | This domain receives the signal from the sensor partner in bacterial two-component systems. It is usually found N-terminal to a DNA binding effector domain. | Domain | |
PF00196 | Bacterial regulatory proteins, luxR family (GerE) | Bacterial regulatory proteins, luxR family | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR011006 | CheY-like superfamily | Homologous Superfamily | |
IPR001789 | Signal transduction response regulator, receiver domain | Domain | |
IPR000792 | Transcription regulator LuxR, C-terminal | Domain | |
IPR036388 | Winged helix-like DNA-binding domain superfamily | Homologous Superfamily |