1YHN
Structure basis of RILP recruitment by Rab7
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1yhna_ | Alpha and beta proteins (a/b) | P-loop containing nucleoside triphosphate hydrolases | P-loop containing nucleoside triphosphate hydrolases | G proteins | Rab7 | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
B | d1yhnb1 | Coiled coil proteins | Parallel coiled-coil | RILP dimerisation region | RILP dimerisation region | Rab-interacting lysosomal protein RLIP | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Ras-like P-loop GTPases | 8057260 | 3002022 | SCOP2B (2022-06-29) |
B | SCOP2 Family | RILP dimerisation region | 8020109 | 4002930 | SCOP2 (2022-06-29) |
B | SCOP2 Superfamily | RILP dimerisation region | 8032489 | 3001915 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (4.3.0) |
B | 6.10.230.10 | Special | Helix non-globular | YejL-like | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00071 | Ras family (Ras) | Ras family | Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See Pfam:PF00009 Pfam:PF00025, Pfam:PF00063. As regards Rab GTPases, these are important regulators of vesicle formation, motil ... | Domain | |
PF11461 | Rab interacting lysosomal protein (RILP) | Rab interacting lysosomal protein | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily | |
IPR005225 | Small GTP-binding domain | Domain | |
IPR001806 | Small GTPase | Family | |
IPR034743 | RH1 domain | Domain | |
IPR019143 | JNK/Rab-associated_protein-1_N | Unknown | |
IPR034744 | RH2 domain | Domain | |
IPR021563 | Rab interacting lysosomal protein, dimerization domain | Domain | |
IPR051241 | DZIP and RILPL | Family |