1YH8
Crystal structure of Aquifex aeolicus LpxC deacetylase complexed with palmitate
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1yh8a1 | Alpha and beta proteins (a+b) | Ribosomal protein S5 domain 2-like | Ribosomal protein S5 domain 2-like | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC | (Aquifex aeolicus ) [TaxId: 63363 ], | SCOPe (2.08) |
B | d1yh8b1 | Alpha and beta proteins (a+b) | Ribosomal protein S5 domain 2-like | Ribosomal protein S5 domain 2-like | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC | (Aquifex aeolicus ) [TaxId: 63363 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8034593 | 3000100 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8034594 | 3000100 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8034593 | 3000100 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8034594 | 3000100 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | LpxC | e1yh8A1 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: LpxC | ECOD (1.6) |
A | UNK_F_TYPE | e1yh8A2 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: UNK_F_TYPE | ECOD (1.6) |
B | LpxC | e1yh8B1 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: LpxC | ECOD (1.6) |
B | UNK_F_TYPE | e1yh8B2 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: UNK_F_TYPE | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.230.20 | Alpha Beta | 2-Layer Sandwich | Ribosomal Protein S5 | domain 2 | CATH (4.3.0) |
A | 3.30.1700.10 | Alpha Beta | 2-Layer Sandwich | lpxc deacetylase, domain 1 | lpxc deacetylase, domain 2 | CATH (4.3.0) |
B | 3.30.230.20 | Alpha Beta | 2-Layer Sandwich | Ribosomal Protein S5 | domain 2 | CATH (4.3.0) |
B | 3.30.1700.10 | Alpha Beta | 2-Layer Sandwich | lpxc deacetylase, domain 1 | lpxc deacetylase, domain 2 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF03331 | UDP-3-O-acyl N-acetylglycosamine deacetylase (LpxC) | UDP-3-O-acyl N-acetylglycosamine deacetylase | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR004463 | UDP-3-O-acyl N-acetylglucosamine deacetylase | Family | |
IPR020568 | Ribosomal protein uS5 domain 2-type superfamily | Homologous Superfamily | |
IPR015870 | UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal | Homologous Superfamily | |
IPR011334 | UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal | Homologous Superfamily |