Crystallographic Structure of the T=1 Particle of Brome Mosaic Virus
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| Z | SCOP2B Superfamily | Positive stranded ssRNA viruses-like | 8034319 | 3000918 | SCOP2B (2022-06-29) |
| Y | SCOP2B Superfamily | Positive stranded ssRNA viruses-like | 8034319 | 3000918 | SCOP2B (2022-06-29) |
| X | SCOP2B Superfamily | Positive stranded ssRNA viruses-like | 8034319 | 3000918 | SCOP2B (2022-06-29) |
| W | SCOP2B Superfamily | Positive stranded ssRNA viruses-like | 8034319 | 3000918 | SCOP2B (2022-06-29) |
| V | SCOP2B Superfamily | Positive stranded ssRNA viruses-like | 8034319 | 3000918 | SCOP2B (2022-06-29) |
| U | SCOP2B Superfamily | Positive stranded ssRNA viruses-like | 8034319 | 3000918 | SCOP2B (2022-06-29) |
| T | SCOP2B Superfamily | Positive stranded ssRNA viruses-like | 8034319 | 3000918 | SCOP2B (2022-06-29) |
| S | SCOP2B Superfamily | Positive stranded ssRNA viruses-like | 8034319 | 3000918 | SCOP2B (2022-06-29) |
| R | SCOP2B Superfamily | Positive stranded ssRNA viruses-like | 8034319 | 3000918 | SCOP2B (2022-06-29) |
| Q | SCOP2B Superfamily | Positive stranded ssRNA viruses-like | 8034319 | 3000918 | SCOP2B (2022-06-29) |
| P | SCOP2B Superfamily | Positive stranded ssRNA viruses-like | 8034319 | 3000918 | SCOP2B (2022-06-29) |
| O | SCOP2B Superfamily | Positive stranded ssRNA viruses-like | 8034319 | 3000918 | SCOP2B (2022-06-29) |
| N | SCOP2B Superfamily | Positive stranded ssRNA viruses-like | 8034319 | 3000918 | SCOP2B (2022-06-29) |
| M | SCOP2B Superfamily | Positive stranded ssRNA viruses-like | 8034319 | 3000918 | SCOP2B (2022-06-29) |
| L | SCOP2B Superfamily | Positive stranded ssRNA viruses-like | 8034319 | 3000918 | SCOP2B (2022-06-29) |
| K | SCOP2B Superfamily | Positive stranded ssRNA viruses-like | 8034319 | 3000918 | SCOP2B (2022-06-29) |
| J | SCOP2B Superfamily | Positive stranded ssRNA viruses-like | 8034319 | 3000918 | SCOP2B (2022-06-29) |
| I | SCOP2B Superfamily | Positive stranded ssRNA viruses-like | 8034319 | 3000918 | SCOP2B (2022-06-29) |
| H | SCOP2B Superfamily | Positive stranded ssRNA viruses-like | 8034319 | 3000918 | SCOP2B (2022-06-29) |
| G | SCOP2B Superfamily | Positive stranded ssRNA viruses-like | 8034319 | 3000918 | SCOP2B (2022-06-29) |
| F | SCOP2B Superfamily | Positive stranded ssRNA viruses-like | 8034319 | 3000918 | SCOP2B (2022-06-29) |
| E | SCOP2B Superfamily | Positive stranded ssRNA viruses-like | 8034319 | 3000918 | SCOP2B (2022-06-29) |
| DA [auth 4] | SCOP2B Superfamily | Positive stranded ssRNA viruses-like | 8034319 | 3000918 | SCOP2B (2022-06-29) |
| D | SCOP2B Superfamily | Positive stranded ssRNA viruses-like | 8034319 | 3000918 | SCOP2B (2022-06-29) |
| CA [auth 3] | SCOP2B Superfamily | Positive stranded ssRNA viruses-like | 8034319 | 3000918 | SCOP2B (2022-06-29) |
| C | SCOP2B Superfamily | Positive stranded ssRNA viruses-like | 8034319 | 3000918 | SCOP2B (2022-06-29) |
| BA [auth 2] | SCOP2B Superfamily | Positive stranded ssRNA viruses-like | 8034319 | 3000918 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | Positive stranded ssRNA viruses-like | 8034319 | 3000918 | SCOP2B (2022-06-29) |
| AA [auth 1] | SCOP2 Family | Bromoviridae-like VP | 8021939 | 4003474 | SCOP2 (2022-06-29) |
| AA [auth 1] | SCOP2 Superfamily | Positive stranded ssRNA viruses-like | 8034319 | 3000918 | SCOP2 (2022-06-29) |
| A | SCOP2B Superfamily | Positive stranded ssRNA viruses-like | 8034319 | 3000918 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| Z | TNF | e1yc6Z1 | A: beta barrels | X: Phage tail fiber protein trimerization domain | H: beta-Prism I | T: beta-Prism I | F: TNF | ECOD (v294.2) |
| Y | TNF | e1yc6Y1 | A: beta barrels | X: Phage tail fiber protein trimerization domain | H: beta-Prism I | T: beta-Prism I | F: TNF | ECOD (v294.2) |
| X | TNF | e1yc6X1 | A: beta barrels | X: Phage tail fiber protein trimerization domain | H: beta-Prism I | T: beta-Prism I | F: TNF | ECOD (v294.2) |
| W | TNF | e1yc6W1 | A: beta barrels | X: Phage tail fiber protein trimerization domain | H: beta-Prism I | T: beta-Prism I | F: TNF | ECOD (v294.2) |
| V | TNF | e1yc6V1 | A: beta barrels | X: Phage tail fiber protein trimerization domain | H: beta-Prism I | T: beta-Prism I | F: TNF | ECOD (v294.2) |
| U | TNF | e1yc6U1 | A: beta barrels | X: Phage tail fiber protein trimerization domain | H: beta-Prism I | T: beta-Prism I | F: TNF | ECOD (v294.2) |
| T | TNF | e1yc6T1 | A: beta barrels | X: Phage tail fiber protein trimerization domain | H: beta-Prism I | T: beta-Prism I | F: TNF | ECOD (v294.2) |
| S | TNF | e1yc6S1 | A: beta barrels | X: Phage tail fiber protein trimerization domain | H: beta-Prism I | T: beta-Prism I | F: TNF | ECOD (v294.2) |
| R | TNF | e1yc6R1 | A: beta barrels | X: Phage tail fiber protein trimerization domain | H: beta-Prism I | T: beta-Prism I | F: TNF | ECOD (v294.2) |
| Q | TNF | e1yc6Q1 | A: beta barrels | X: Phage tail fiber protein trimerization domain | H: beta-Prism I | T: beta-Prism I | F: TNF | ECOD (v294.2) |
| P | TNF | e1yc6P1 | A: beta barrels | X: Phage tail fiber protein trimerization domain | H: beta-Prism I | T: beta-Prism I | F: TNF | ECOD (v294.2) |
| O | TNF | e1yc6O1 | A: beta barrels | X: Phage tail fiber protein trimerization domain | H: beta-Prism I | T: beta-Prism I | F: TNF | ECOD (v294.2) |
| N | TNF | e1yc6N1 | A: beta barrels | X: Phage tail fiber protein trimerization domain | H: beta-Prism I | T: beta-Prism I | F: TNF | ECOD (v294.2) |
| M | TNF | e1yc6M1 | A: beta barrels | X: Phage tail fiber protein trimerization domain | H: beta-Prism I | T: beta-Prism I | F: TNF | ECOD (v294.2) |
| L | TNF | e1yc6L1 | A: beta barrels | X: Phage tail fiber protein trimerization domain | H: beta-Prism I | T: beta-Prism I | F: TNF | ECOD (v294.2) |
| K | TNF | e1yc6K1 | A: beta barrels | X: Phage tail fiber protein trimerization domain | H: beta-Prism I | T: beta-Prism I | F: TNF | ECOD (v294.2) |
| J | TNF | e1yc6J1 | A: beta barrels | X: Phage tail fiber protein trimerization domain | H: beta-Prism I | T: beta-Prism I | F: TNF | ECOD (v294.2) |
| I | TNF | e1yc6I1 | A: beta barrels | X: Phage tail fiber protein trimerization domain | H: beta-Prism I | T: beta-Prism I | F: TNF | ECOD (v294.2) |
| H | TNF | e1yc6H1 | A: beta barrels | X: Phage tail fiber protein trimerization domain | H: beta-Prism I | T: beta-Prism I | F: TNF | ECOD (v294.2) |
| G | TNF | e1yc6G1 | A: beta barrels | X: Phage tail fiber protein trimerization domain | H: beta-Prism I | T: beta-Prism I | F: TNF | ECOD (v294.2) |
| F | TNF | e1yc6F1 | A: beta barrels | X: Phage tail fiber protein trimerization domain | H: beta-Prism I | T: beta-Prism I | F: TNF | ECOD (v294.2) |
| E | TNF | e1yc6E1 | A: beta barrels | X: Phage tail fiber protein trimerization domain | H: beta-Prism I | T: beta-Prism I | F: TNF | ECOD (v294.2) |
| DA [auth 4] | TNF | e1yc641 | A: beta barrels | X: Phage tail fiber protein trimerization domain | H: beta-Prism I | T: beta-Prism I | F: TNF | ECOD (v294.2) |
| D | TNF | e1yc6D1 | A: beta barrels | X: Phage tail fiber protein trimerization domain | H: beta-Prism I | T: beta-Prism I | F: TNF | ECOD (v294.2) |
| CA [auth 3] | TNF | e1yc631 | A: beta barrels | X: Phage tail fiber protein trimerization domain | H: beta-Prism I | T: beta-Prism I | F: TNF | ECOD (v294.2) |
| C | TNF | e1yc6C1 | A: beta barrels | X: Phage tail fiber protein trimerization domain | H: beta-Prism I | T: beta-Prism I | F: TNF | ECOD (v294.2) |
| BA [auth 2] | TNF | e1yc621 | A: beta barrels | X: Phage tail fiber protein trimerization domain | H: beta-Prism I | T: beta-Prism I | F: TNF | ECOD (v294.2) |
| B | TNF | e1yc6B1 | A: beta barrels | X: Phage tail fiber protein trimerization domain | H: beta-Prism I | T: beta-Prism I | F: TNF | ECOD (v294.2) |
| AA [auth 1] | Bromo_coat | e1yc611 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Bromo_coat | ECOD (v294.2) |
| A | TNF | e1yc6A1 | A: beta barrels | X: Phage tail fiber protein trimerization domain | H: beta-Prism I | T: beta-Prism I | F: TNF | ECOD (v294.2) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF01318 | Bromovirus coat protein (Bromo_coat) | Bromovirus coat protein | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR002009 | Bromovirus coat protein | Family |














