1WHF | pdb_00001whf

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1whfa1	Small proteins	Knottins (small inhibitors, toxins, lectins)	EGF/Laminin	EGF-type module	Factor X, N-terminal module	(Bos taurus ) [TaxId: 9913 ],	SCOPe (2.08)
A	d1whfa2	Small proteins	GLA-domain	GLA-domain	GLA-domain	Coagulation factor X	(Bos taurus ) [TaxId: 9913 ],	SCOPe (2.08)

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	GLA-domain	8034137	3001028	SCOP2B (2022-06-29)

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	EGF	e1whfA1	A: beta barrels	X: EGF-like	H: EGF-related	T: EGF/Laminin	F: EGF	ECOD (v294.2)
A	Gla	e1whfA2	A: beta barrels	X: TIM beta/alpha-barrel	H: Type X cellulose binding domain, CBDX	T: Type X cellulose binding domain, CBDX	F: Gla	ECOD (v294.2)

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	4.10.740.10	Few Secondary Structures	Irregular	Coagulation Factor IX	Coagulation Factor IX	CATH (4.3.0)
A	2.10.25.10	Mainly Beta	Ribbon	Laminin	Laminin	CATH (4.3.0)

Chains	Accession	Name	Description	Comments	Source
A	PF00008	EGF-like domain (EGF)	EGF-like domain	There is no clear separation between noise and signal. Pfam:PF00053 is very similar, but has 8 instead of 6 conserved cysteines. Includes some cytokine receptors. The EGF domain misses the N-terminus regions of the Ca2+ binding EGF domains (this is t ...	There is no clear separation between noise and signal. Pfam:PF00053 is very similar, but has 8 instead of 6 conserved cysteines. Includes some cytokine receptors. The EGF domain misses the N-terminus regions of the Ca2+ binding EGF domains (this is the main reason of discrepancy between swiss-prot domain start/end and Pfam). The family is hard to model due to many similar but different sub-types of EGF domains. Pfam certainly misses a number of EGF domains.	Domain
A	PF00594	Vitamin K-dependent carboxylation/gamma-carboxyglutamic (GLA) domain (Gla)	Vitamin K-dependent carboxylation/gamma-carboxyglutamic (GLA) domain	This domain is responsible for the high-affinity binding of calcium ions. This domain contains post-translational modifications of many glutamate residues by Vitamin K-dependent carboxylation to form gamma-carboxyglutamate (Gla).	Domain

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	COAGULATION FACTOR X	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding peptidase activity catalytic activity, acting on a protein serine hydrolase activity serine-type peptidase activity hydrolase activity serine-type endopeptidase activity catalytic activity endopeptidase activity	multicellular organismal process regulation of body fluid levels wound healing response to stimulus hemostasis biological regulation blood coagulation response to stress coagulation regulation of biological quality response to wounding proteolysis metabolic process cellular process multicellular organismal process regulation of body fluid levels wound healing response to stimulus hemostasis biological regulation blood coagulation response to stress coagulation regulation of biological quality response to wounding proteolysis metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process	-

Chains	Accession	Name	Type
A	IPR050442	Peptidase S1 family, coagulation factors	Family
A	IPR009003	Peptidase S1, PA clan	Homologous Superfamily
A	IPR000294	Gamma-carboxyglutamic acid-rich (GLA) domain	Domain
A	IPR017857	Coagulation factor-like, Gla domain superfamily	Homologous Superfamily
A	IPR018097	EGF-like calcium-binding, conserved site	Conserved Site
A	IPR001314	Peptidase S1A, chymotrypsin family	Family
A	IPR033116	Serine proteases, trypsin family, serine active site	Active Site
A	IPR001254	Serine proteases, trypsin domain	Domain
A	IPR035972	Gamma-carboxyglutamic acid-rich (GLA) domain superfamily	Homologous Superfamily
A	IPR001881	EGF-like calcium-binding domain	Domain
A	IPR000742	EGF-like domain	Domain
A	IPR000152	EGF-type aspartate/asparagine hydroxylation site	PTM
A	IPR018114	Serine proteases, trypsin family, histidine active site	Active Site
A	IPR012224	Peptidase S1A, coagulation factor VII/IX/X/C/Z	Family
A	IPR043504	Peptidase_S1_PA_chymotrypsin	Unknown

Modified Residue(s)
Chain	Residue(s)	Description
A	BHD	Parent Component: ASP : AA0579 : (2S,3S)-3-hydroxyaspartic acid MOD:01919
A	CGU	Parent Component: GLU : AA0579 , AA0032 : (2S,3S)-3-hydroxyaspartic acid MOD:01919 , L-gamma-carboxyglutamic acid MOD:00041

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.