1W88
The crystal structure of pyruvate dehydrogenase E1(D180N,E183Q) bound to the peripheral subunit binding domain of E2
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
I | SCOP2B Superfamily | Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex | 8043331 | 3001183 | SCOP2B (2021-05-27) |
J | SCOP2B Superfamily | Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex | 8043331 | 3001183 | SCOP2B (2021-05-27) |
A | SCOP2B Superfamily | Thiamin diphosphate-binding fold (THDP-binding) | 8043326 | 3001790 | SCOP2B (2021-05-27) |
C | SCOP2B Superfamily | Thiamin diphosphate-binding fold (THDP-binding) | 8043326 | 3001790 | SCOP2B (2021-05-27) |
E | SCOP2B Superfamily | Thiamin diphosphate-binding fold (THDP-binding) | 8043326 | 3001790 | SCOP2B (2021-05-27) |
G | SCOP2B Superfamily | Thiamin diphosphate-binding fold (THDP-binding) | 8043326 | 3001790 | SCOP2B (2021-05-27) |
B | SCOP2B Superfamily | Thiamin diphosphate-binding fold (THDP-binding) | 8043324 | 3001790 | SCOP2B (2021-05-27) |
B | SCOP2B Superfamily | TK C-terminal domain-like | 8043325 | 3000424 | SCOP2B (2021-05-27) |
D | SCOP2B Superfamily | TK C-terminal domain-like | 8043325 | 3000424 | SCOP2B (2021-05-27) |
D | SCOP2B Superfamily | Thiamin diphosphate-binding fold (THDP-binding) | 8043324 | 3001790 | SCOP2B (2021-05-27) |
F | SCOP2B Superfamily | Thiamin diphosphate-binding fold (THDP-binding) | 8043324 | 3001790 | SCOP2B (2021-05-27) |
F | SCOP2B Superfamily | TK C-terminal domain-like | 8043325 | 3000424 | SCOP2B (2021-05-27) |
H | SCOP2B Superfamily | TK C-terminal domain-like | 8043325 | 3000424 | SCOP2B (2021-05-27) |
H | SCOP2B Superfamily | Thiamin diphosphate-binding fold (THDP-binding) | 8043324 | 3001790 | SCOP2B (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
I | PF02817 | e1w88I1 | A: alpha arrays | X: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex (From Topology) | H: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex (From Topology) | T: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex | F: PF02817 | ECOD (1.6) |
J | PF02817 | e1w88J1 | A: alpha arrays | X: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex (From Topology) | H: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex (From Topology) | T: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex | F: PF02817 | ECOD (1.6) |
A | PF00676 | e1w88A1 | A: a/b three-layered sandwiches | X: Thiamin diphosphate-binding fold (THDP-binding) (From Topology) | H: Thiamin diphosphate-binding fold (THDP-binding) (From Topology) | T: Thiamin diphosphate-binding fold (THDP-binding) | F: PF00676 | ECOD (1.6) |
C | PF00676 | e1w88C1 | A: a/b three-layered sandwiches | X: Thiamin diphosphate-binding fold (THDP-binding) (From Topology) | H: Thiamin diphosphate-binding fold (THDP-binding) (From Topology) | T: Thiamin diphosphate-binding fold (THDP-binding) | F: PF00676 | ECOD (1.6) |
E | PF00676 | e1w88E1 | A: a/b three-layered sandwiches | X: Thiamin diphosphate-binding fold (THDP-binding) (From Topology) | H: Thiamin diphosphate-binding fold (THDP-binding) (From Topology) | T: Thiamin diphosphate-binding fold (THDP-binding) | F: PF00676 | ECOD (1.6) |
G | PF00676 | e1w88G1 | A: a/b three-layered sandwiches | X: Thiamin diphosphate-binding fold (THDP-binding) (From Topology) | H: Thiamin diphosphate-binding fold (THDP-binding) (From Topology) | T: Thiamin diphosphate-binding fold (THDP-binding) | F: PF00676 | ECOD (1.6) |
B | PF02780 | e1w88B1 | A: a/b three-layered sandwiches | X: TK C-terminal domain-like (From Topology) | H: TK C-terminal domain-like (From Topology) | T: TK C-terminal domain-like | F: PF02780 | ECOD (1.6) |
B | PF02779 | e1w88B2 | A: a/b three-layered sandwiches | X: Thiamin diphosphate-binding fold (THDP-binding) (From Topology) | H: Thiamin diphosphate-binding fold (THDP-binding) (From Topology) | T: Thiamin diphosphate-binding fold (THDP-binding) | F: PF02779 | ECOD (1.6) |
D | PF02780 | e1w88D1 | A: a/b three-layered sandwiches | X: TK C-terminal domain-like (From Topology) | H: TK C-terminal domain-like (From Topology) | T: TK C-terminal domain-like | F: PF02780 | ECOD (1.6) |
D | PF02779 | e1w88D2 | A: a/b three-layered sandwiches | X: Thiamin diphosphate-binding fold (THDP-binding) (From Topology) | H: Thiamin diphosphate-binding fold (THDP-binding) (From Topology) | T: Thiamin diphosphate-binding fold (THDP-binding) | F: PF02779 | ECOD (1.6) |
F | PF02780 | e1w88F1 | A: a/b three-layered sandwiches | X: TK C-terminal domain-like (From Topology) | H: TK C-terminal domain-like (From Topology) | T: TK C-terminal domain-like | F: PF02780 | ECOD (1.6) |
F | PF02779 | e1w88F2 | A: a/b three-layered sandwiches | X: Thiamin diphosphate-binding fold (THDP-binding) (From Topology) | H: Thiamin diphosphate-binding fold (THDP-binding) (From Topology) | T: Thiamin diphosphate-binding fold (THDP-binding) | F: PF02779 | ECOD (1.6) |
H | PF02780 | e1w88H1 | A: a/b three-layered sandwiches | X: TK C-terminal domain-like (From Topology) | H: TK C-terminal domain-like (From Topology) | T: TK C-terminal domain-like | F: PF02780 | ECOD (1.6) |
H | PF02779 | e1w88H2 | A: a/b three-layered sandwiches | X: Thiamin diphosphate-binding fold (THDP-binding) (From Topology) | H: Thiamin diphosphate-binding fold (THDP-binding) (From Topology) | T: Thiamin diphosphate-binding fold (THDP-binding) | F: PF02779 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02817 | e3 binding domain (E3_binding) | e3 binding domain | - | Family | |
PF00676 | Dehydrogenase E1 component (E1_dh) | Dehydrogenase E1 component | - | Family | |
PF02779 | Transketolase, pyrimidine binding domain (Transket_pyr) | Transketolase, pyrimidine binding domain | This family includes transketolase enzymes, pyruvate dehydrogenases, and branched chain alpha-keto acid decarboxylases. | Domain | |
PF02780 | Transketolase, C-terminal domain (Transketolase_C) | Transketolase, C-terminal domain | The C-terminal domain of transketolase has been proposed as a regulatory molecule binding site [2]. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR001078 | 2-oxoacid dehydrogenase acyltransferase, catalytic domain | Domain | |
IPR023213 | Chloramphenicol acetyltransferase-like domain superfamily | Homologous Superfamily | |
IPR036625 | E3-binding domain superfamily | Homologous Superfamily | |
IPR004167 | Peripheral subunit-binding domain | Domain | |
IPR011053 | Single hybrid motif | Homologous Superfamily | |
IPR003016 | 2-oxo acid dehydrogenase, lipoyl-binding site | Binding Site | |
IPR000089 | Biotin/lipoyl attachment | Domain | |
IPR017596 | Pyruvate dehydrogenase E1 component subunit alpha/BCKADH E1-alpha | Family | |
IPR029061 | Thiamin diphosphate-binding fold | Homologous Superfamily | |
IPR001017 | Dehydrogenase, E1 component | Domain | |
IPR005475 | Transketolase-like, pyrimidine-binding domain | Domain | |
IPR029061 | Thiamin diphosphate-binding fold | Homologous Superfamily | |
IPR009014 | Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II | Homologous Superfamily | |
IPR033248 | Transketolase, C-terminal domain | Domain |