1VSG
2.9 ANGSTROMS RESOLUTION STRUCTURE OF THE N-TERMINAL DOMAIN OF A VARIANT SURFACE GLYCOPROTEIN FROM TRYPANOSOMA BRUCEI
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1vsga_ | Coiled coil proteins | Antiparallel coiled-coil | Variant surface glycoprotein (N-terminal domain) | Variant surface glycoprotein (N-terminal domain) | Variant surface glycoprotein (N-terminal domain) | (Trypanosoma brucei brucei ) [TaxId: 5702 ], | SCOPe (2.08) |
B | d1vsgb_ | Coiled coil proteins | Antiparallel coiled-coil | Variant surface glycoprotein (N-terminal domain) | Variant surface glycoprotein (N-terminal domain) | Variant surface glycoprotein (N-terminal domain) | (Trypanosoma brucei brucei ) [TaxId: 5702 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | UNK_F_TYPE | e1vsgA1 | A: a+b complex topology | X: VSG (variant surface glycoprotein) N-terminal domain (From Topology) | H: VSG (variant surface glycoprotein) N-terminal domain (From Topology) | T: VSG (variant surface glycoprotein) N-terminal domain | F: UNK_F_TYPE | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.90.150.10 | Alpha Beta | Alpha-Beta Complex | Variant Surface Glycoprotein | Chain A domain 1 | CATH (4.3.0) |
A | 1.10.470.10 | Mainly Alpha | Orthogonal Bundle | Variant Surface Glycoprotein, subunit A | domain 2 | CATH (4.3.0) |
B | 3.90.150.10 | Alpha Beta | Alpha-Beta Complex | Variant Surface Glycoprotein | Chain A domain 1 | CATH (4.3.0) |
B | 1.10.470.10 | Mainly Alpha | Orthogonal Bundle | Variant Surface Glycoprotein, subunit A | domain 2 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00913 | Trypanosome variant surface glycoprotein (A-type) (Trypan_glycop) | Trypanosome variant surface glycoprotein (A-type) | The trypanosome parasite expresses these proteins to evade the immune response. This family includes a variety of surface proteins such as Trypanosoma brucei VSGs such as expression site associated gene (ESAG) 6 and 7 [3]. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR027446 | Variant surface glycoprotein C-terminal domain superfamily | Homologous Superfamily | |
IPR001812 | Trypanosome variant surface glycoprotein, A-type, N-terminal domain | Domain |
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
Chains | Resource Link | Group | Subgroup | Protein |
---|---|---|---|---|
mpstruc | MONOTOPIC MEMBRANE PROTEINS | Variant Surface Glycoproteins (VSG) | N-terminal Domain of VSG2 (MITat 1.2) |