1VKI
Crystal structure of a putative oligo-nucleotide binding protein (atu3699, agr_l_2275) from agrobacterium tumefaciens str. c58 at 1.60 A resolution
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1vkia_ | Alpha and beta proteins (a+b) | YbaK/ProRS associated domain | YbaK/ProRS associated domain | YbaK/ProRS associated domain | Hypothetical protein Atu3699 | (Agrobacterium fabrum str. C58 ) [TaxId: 176299 ], | SCOPe (2.08) |
B | d1vkib_ | Alpha and beta proteins (a+b) | YbaK/ProRS associated domain | YbaK/ProRS associated domain | YbaK/ProRS associated domain | Hypothetical protein Atu3699 | (Agrobacterium fabrum str. C58 ) [TaxId: 176299 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF04073 | e1vkiA1 | A: a+b complex topology | X: YbaK/ProRS associated domain (From Topology) | H: YbaK/ProRS associated domain (From Topology) | T: YbaK/ProRS associated domain | F: PF04073 | ECOD (1.6) |
B | PF04073 | e1vkiB1 | A: a+b complex topology | X: YbaK/ProRS associated domain (From Topology) | H: YbaK/ProRS associated domain (From Topology) | T: YbaK/ProRS associated domain | F: PF04073 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.90.960.10 | Alpha Beta | Alpha-Beta Complex | YbaK protein | YbaK/aminoacyl-tRNA synthetase-associated domain | CATH (4.3.0) |
B | 3.90.960.10 | Alpha Beta | Alpha-Beta Complex | YbaK protein | YbaK/aminoacyl-tRNA synthetase-associated domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF04073 | Aminoacyl-tRNA editing domain (tRNA_edit) | Aminoacyl-tRNA editing domain | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
HYPOTHETICAL PROTEIN ATU3699 | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR007214 | YbaK/aminoacyl-tRNA synthetase-associated domain | Domain | |
IPR040285 | Prolyl-tRNA editing protein ProX/PRXD1 | Family | |
IPR036754 | YbaK/aminoacyl-tRNA synthetase-associated domain superfamily | Homologous Superfamily |