1VG9
The crystal structures of the REP-1 protein in complex with C-terminally truncated Rab7 protein
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | GDI isoprenoid-binding domain-like | 8091669 | 3002533 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Flavoreductase-like | 8044604 | 3000055 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Flavoreductase-like | 8044604 | 3000055 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | GDI isoprenoid-binding domain-like | 8091669 | 3002533 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Flavoreductase-like | 8044604 | 3000055 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | GDI isoprenoid-binding domain-like | 8091669 | 3002533 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | Flavoreductase-like | 8044604 | 3000055 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | GDI isoprenoid-binding domain-like | 8091669 | 3002533 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Ras-like P-loop GTPases | 8079222 | 3002022 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Ras-like P-loop GTPases | 8079222 | 3002022 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Ras-like P-loop GTPases | 8079222 | 3002022 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | Ras-like P-loop GTPases | 8079222 | 3002022 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF22603 | e1vg9A3 | A: a+b two layers | X: FAD-linked reductases, C-terminal domain-like | H: FAD-linked reductases-C (From Topology) | T: FAD-linked reductases-C | F: PF22603 | ECOD (1.6) |
A | PF00996 | e1vg9A4 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: FAD/NAD(P)-binding domain | F: PF00996 | ECOD (1.6) |
C | PF22603 | e1vg9C1 | A: a+b two layers | X: FAD-linked reductases, C-terminal domain-like | H: FAD-linked reductases-C (From Topology) | T: FAD-linked reductases-C | F: PF22603 | ECOD (1.6) |
C | PF00996 | e1vg9C2 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: FAD/NAD(P)-binding domain | F: PF00996 | ECOD (1.6) |
E | PF22603 | e1vg9E3 | A: a+b two layers | X: FAD-linked reductases, C-terminal domain-like | H: FAD-linked reductases-C (From Topology) | T: FAD-linked reductases-C | F: PF22603 | ECOD (1.6) |
E | PF00996 | e1vg9E4 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: FAD/NAD(P)-binding domain | F: PF00996 | ECOD (1.6) |
G | PF22603 | e1vg9G4 | A: a+b two layers | X: FAD-linked reductases, C-terminal domain-like | H: FAD-linked reductases-C (From Topology) | T: FAD-linked reductases-C | F: PF22603 | ECOD (1.6) |
G | PF00996 | e1vg9G2 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: FAD/NAD(P)-binding domain | F: PF00996 | ECOD (1.6) |
B | PF00071 | e1vg9B1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00071 | ECOD (1.6) |
D | PF00071 | e1vg9D1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00071 | ECOD (1.6) |
F | PF00071 | e1vg9F1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00071 | ECOD (1.6) |
H | PF00071 | e1vg9H1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00071 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00996 | GDP dissociation inhibitor (GDI) | GDP dissociation inhibitor | - | Family | |
PF22603 | RAE1/2 domain I, C-terminal region (RAE1_2_domI_C) | RAE1/2 domain I, C-terminal region | This entry represents the C-terminal region of domain I from Rab escort proteins 1/2 (RAE1/2, also known as Rab proteins geranylgeranyltransferase component A 1/2) which are the substrate-binding subunit of the Rab geranylgeranyltransferase (GGTase) ... | Domain | |
PF00071 | Ras family (Ras) | Ras family | Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See Pfam:PF00009 Pfam:PF00025, Pfam:PF00063. As regards Rab GTPases, these are important regulators of vesicle formation, motil ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR036188 | FAD/NAD(P)-binding domain superfamily | Homologous Superfamily | |
IPR001738 | Rab protein geranylgeranyltransferase component A | Family | |
IPR018203 | GDP dissociation inhibitor | Family | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily | |
IPR005225 | Small GTP-binding domain | Domain | |
IPR001806 | Small GTPase | Family |