Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad1vcba_ Alpha and beta proteins (a+b) beta-Grasp (ubiquitin-like) Ubiquitin-like Ubiquitin-related Elongin B human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Dd1vcbd_ Alpha and beta proteins (a+b) beta-Grasp (ubiquitin-like) Ubiquitin-like Ubiquitin-related Elongin B human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Gd1vcbg_ Alpha and beta proteins (a+b) beta-Grasp (ubiquitin-like) Ubiquitin-like Ubiquitin-related Elongin B human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Jd1vcbj_ Alpha and beta proteins (a+b) beta-Grasp (ubiquitin-like) Ubiquitin-like Ubiquitin-related Elongin B human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Bd1vcbb_ Alpha and beta proteins (a+b) POZ domain POZ domain BTB/POZ domain Elongin C human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Ed1vcbe_ Alpha and beta proteins (a+b) POZ domain POZ domain BTB/POZ domain Elongin C human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Hd1vcbh_ Alpha and beta proteins (a+b) POZ domain POZ domain BTB/POZ domain Elongin C human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Kd1vcbk_ Alpha and beta proteins (a+b) POZ domain POZ domain BTB/POZ domain Elongin C human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Cd1vcbc_ All beta proteins Prealbumin-like VHL VHL VHL human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Fd1vcbf_ All beta proteins Prealbumin-like VHL VHL VHL human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Id1vcbi_ All beta proteins Prealbumin-like VHL VHL VHL human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Ld1vcbl_ All beta proteins Prealbumin-like VHL VHL VHL human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyUbiquitin-like 8038575 3000157 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyUbiquitin-like 8038575 3000157 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyUbiquitin-like 8038575 3000157 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyUbiquitin-like 8038575 3000157 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyVHL 8041313 3000841 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyVHL 8041313 3000841 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyVHL 8041313 3000841 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyVHL 8041313 3000841 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
Aubiquitin_2e1vcbA1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: ubiquitin_2ECOD (1.6)
Dubiquitin_2e1vcbD1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: ubiquitin_2ECOD (1.6)
Gubiquitin_2e1vcbG1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: ubiquitin_2ECOD (1.6)
Jubiquitin_2e1vcbJ1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: ubiquitin_2ECOD (1.6)
BSkp1_POZ_1e1vcbB1 A: a+b two layersX: POZ domain (From Topology)H: POZ domain (From Topology)T: POZ domainF: Skp1_POZ_1ECOD (1.6)
ESkp1_POZ_1e1vcbE1 A: a+b two layersX: POZ domain (From Topology)H: POZ domain (From Topology)T: POZ domainF: Skp1_POZ_1ECOD (1.6)
HSkp1_POZ_1e1vcbH1 A: a+b two layersX: POZ domain (From Topology)H: POZ domain (From Topology)T: POZ domainF: Skp1_POZ_1ECOD (1.6)
KSkp1_POZ_1e1vcbK1 A: a+b two layersX: POZ domain (From Topology)H: POZ domain (From Topology)T: POZ domainF: Skp1_POZ_1ECOD (1.6)
CVHLe1vcbC1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Prealbumin-likeF: VHLECOD (1.6)
CVHL_Ce1vcbC2 A: alpha arraysX: SOCS box-like (From Topology)H: SOCS box-like (From Topology)T: SOCS box-likeF: VHL_CECOD (1.6)
FVHLe1vcbF1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Prealbumin-likeF: VHLECOD (1.6)
FVHL_Ce1vcbF2 A: alpha arraysX: SOCS box-like (From Topology)H: SOCS box-like (From Topology)T: SOCS box-likeF: VHL_CECOD (1.6)
IVHLe1vcbI1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Prealbumin-likeF: VHLECOD (1.6)
IVHL_Ce1vcbI2 A: alpha arraysX: SOCS box-like (From Topology)H: SOCS box-like (From Topology)T: SOCS box-likeF: VHL_CECOD (1.6)
LVHLe1vcbL1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Prealbumin-likeF: VHLECOD (1.6)
LVHL_Ce1vcbL2 A: alpha arraysX: SOCS box-like (From Topology)H: SOCS box-like (From Topology)T: SOCS box-likeF: VHL_CECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.10.20.90 Alpha Beta Roll Ubiquitin-like (UB roll) Phosphatidylinositol 3-kinase Catalytic SubunitCATH (4.3.0)
D3.10.20.90 Alpha Beta Roll Ubiquitin-like (UB roll) Phosphatidylinositol 3-kinase Catalytic SubunitCATH (4.3.0)
G3.10.20.90 Alpha Beta Roll Ubiquitin-like (UB roll) Phosphatidylinositol 3-kinase Catalytic SubunitCATH (4.3.0)
J3.10.20.90 Alpha Beta Roll Ubiquitin-like (UB roll) Phosphatidylinositol 3-kinase Catalytic SubunitCATH (4.3.0)
B3.30.710.10 Alpha Beta 2-Layer Sandwich Potassium Channel Kv1.1 Chain ACATH (4.3.0)
E3.30.710.10 Alpha Beta 2-Layer Sandwich Potassium Channel Kv1.1 Chain ACATH (4.3.0)
H3.30.710.10 Alpha Beta 2-Layer Sandwich Potassium Channel Kv1.1 Chain ACATH (4.3.0)
K3.30.710.10 Alpha Beta 2-Layer Sandwich Potassium Channel Kv1.1 Chain ACATH (4.3.0)
C1.10.750.10 Mainly Alpha Orthogonal Bundle Elongin C Chain C, domain 1CATH (4.3.0)
C2.60.40.780 Mainly Beta Sandwich Immunoglobulin-like von Hippel-Lindau disease tumour suppressor, beta domainCATH (4.3.0)
F1.10.750.10 Mainly Alpha Orthogonal Bundle Elongin C Chain C, domain 1CATH (4.3.0)
F2.60.40.780 Mainly Beta Sandwich Immunoglobulin-like von Hippel-Lindau disease tumour suppressor, beta domainCATH (4.3.0)
I1.10.750.10 Mainly Alpha Orthogonal Bundle Elongin C Chain C, domain 1CATH (4.3.0)
I2.60.40.780 Mainly Beta Sandwich Immunoglobulin-like von Hippel-Lindau disease tumour suppressor, beta domainCATH (4.3.0)
L1.10.750.10 Mainly Alpha Orthogonal Bundle Elongin C Chain C, domain 1CATH (4.3.0)
L2.60.40.780 Mainly Beta Sandwich Immunoglobulin-like von Hippel-Lindau disease tumour suppressor, beta domainCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, D, G, J
PF00240Ubiquitin family (ubiquitin)Ubiquitin familyThis family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ...This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites [5].
Domain
B, E, H, K
PF03931Skp1 family, tetramerisation domain (Skp1_POZ)Skp1 family, tetramerisation domain- Domain
C, F, I, L
PF17211VHL box domain (VHL_C)VHL box domainThis domain represents the short C-terminal alpha helical domain from the VHL protein [1].Domain
C, F, I, L
PF01847VHL beta domain (VHL)VHL beta domainVHL forms a ternary complex with the elonginB Swiss:O44226 and elonginC Swiss:O13292 proteins. This complex binds Cul2, which then is involved in regulation of vascular endothelial growth factor Swiss:P15692 mRNA.Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, D, G, J
PROTEIN (ELONGIN B)
B, E, H, K
PROTEIN (ELONGIN C)
C, F, I, L
PROTEIN (VHL)

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
A, D, G, J
PharosQ15370
B, E, H, K
PharosQ15369
C, F, I, L
PharosP40337