1UYO

Translocator domain of autotransporter NalP from Neisseria meningitidis

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: MemProtMD
Membrane Protein Annotation: mpstruc

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A [auth X]	d1uyox_	Membrane and cell surface proteins and peptides	Transmembrane beta-barrels	Autotransporter	Autotransporter	Translocator domain of NalP	(Neisseria meningitidis ) [TaxId: 487 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth X]	Autotransporter	e1uyoX1	A: beta barrels	X: Outer membrane meander beta-barrels	H: Autotransporter (From Topology)	T: Autotransporter	F: Autotransporter	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A [auth X]	2.40.128.130	Mainly Beta	Beta Barrel	Lipocalin	Autotransporter beta-domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth X]	PF03797	Autotransporter beta-domain (Autotransporter)	Autotransporter beta-domain	Secretion of protein products occurs by a number of different pathways in bacteria. One of these pathways known as the type V pathway was first described for the IgA1 protease [2]. The protein component that mediates secretion through the outer memb ...	Secretion of protein products occurs by a number of different pathways in bacteria. One of these pathways known as the type V pathway was first described for the IgA1 protease [2]. The protein component that mediates secretion through the outer membrane is contained within the secreted protein itself, hence the proteins secreted in this way are called autotransporters. This family corresponds to the presumed integral membrane beta-barrel domain that transports the protein. This domain is found at the C terminus of the proteins it occurs in. The N terminus contains the variable passenger domain that is translocated across the membrane. Once the passenger domain is exported it is cleaved auto-catalytically in some proteins, in others a different protease is used and in some cases no cleavage occurs [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth X]	NALP	peptidase activity catalytic activity, acting on a protein serine hydrolase activity serine-type peptidase activity hydrolase activity serine-type endopeptidase activity catalytic activity endopeptidase activity	primary metabolic process gene expression macromolecule biosynthetic process protein maturation biosynthetic process proteolysis protein processing metabolic process cellular process protein metabolic process macromolecule metabolic process	cellular anatomical structure extracellular region cell surface cell periphery cell outer membrane external encapsulating structure membrane cell envelope outer membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth X]	IPR023828	Peptidase S8, subtilisin, Ser-active site	Active Site
A [auth X]	IPR036709	Autotransporter beta-domain superfamily	Homologous Superfamily
A [auth X]	IPR013425	Autotransporter-associated beta strand repeat	Repeat
A [auth X]	IPR005546	Autotransporter beta-domain	Domain
A [auth X]	IPR000209	Peptidase S8/S53 domain	Domain
A [auth X]	IPR015500	Peptidase S8, subtilisin-related	Family
A [auth X]	IPR036852	Peptidase S8/S53 domain superfamily	Homologous Superfamily
A [auth X]	IPR034061	Autotransporter serine protease peptidase domain	Domain

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A [auth X]	OPM	Transmembrane	Beta-barrel transmembrane	Autotransporter (AT) (n=12,S=14)	Autotransporters of N-terminal passenger domain

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A [auth X]	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

Chains	External Link	Comment
A [auth X]	MemProtMD	Annotated as membrane protein by MemProtMD

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A [auth X]	mpstruc	TRANSMEMBRANE PROTEINS: BETA-BARREL	Outer Membrane Autotransporters	NalP autotransporter translocator domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.