1UJ5
Crystal structure of Thermus thermophilus ribose-5-phosphate isomerase complexed with ribose-5-phosphate
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1uj5a1 | Alpha and beta proteins (a/b) | NagB/RpiA/CoA transferase-like | NagB/RpiA/CoA transferase-like | D-ribose-5-phosphate isomerase (RpiA), catalytic domain | D-ribose-5-phosphate isomerase (RpiA), catalytic domain | (Thermus thermophilus ) [TaxId: 274 ], | SCOPe (2.08) |
A | d1uj5a2 | Alpha and beta proteins (a+b) | Ferredoxin-like | D-ribose-5-phosphate isomerase (RpiA), lid domain | D-ribose-5-phosphate isomerase (RpiA), lid domain | D-ribose-5-phosphate isomerase (RpiA), lid domain | (Thermus thermophilus ) [TaxId: 274 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | D-ribose-5-phosphate isomerase (RpiA), lid domain | 8040897 | 3001555 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | NagB/RpiA/CoA transferase-like | 8040892 | 3000693 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | NagB/RpiA/CoA transferase-like | 8040892 | 3000693 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Rib_5-P_isom_A_C | e1uj5A1 | A: a+b two layers | X: Alpha-beta plaits | H: D-ribose-5-phosphate isomerase (RpiA), lid domain (From Topology) | T: D-ribose-5-phosphate isomerase (RpiA), lid domain | F: Rib_5-P_isom_A_C | ECOD (1.6) |
A | Rib_5-P_isom_A_N | e1uj5A2 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: NagB/RpiA/CoA transferase-like | F: Rib_5-P_isom_A_N | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.50.1360 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | CATH (4.3.0) | |
A | 3.30.70.260 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | ACT domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF06026 | Ribose 5-phosphate isomerase A (phosphoriboisomerase A) (Rib_5-P_isom_A) | Ribose 5-phosphate isomerase A (phosphoriboisomerase A) | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR037171 | NagB/RpiA transferase-like | Homologous Superfamily | |
IPR020672 | Ribose-5-phosphate isomerase, type A, subgroup | Family | |
IPR004788 | Ribose 5-phosphate isomerase, type A | Family | |
IPR050262 | Ribose 5-phosphate isomerase | Family |