1UG9
Crystal Structure of Glucodextranase from Arthrobacter globiformis I42
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1ug9a1 | All alpha proteins | alpha/alpha toroid | Six-hairpin glycosidases | Bacterial glucoamylase C-terminal domain-like | Glucodextranase, domain A | (Arthrobacter globiformis ) [TaxId: 1665 ], | SCOPe (2.08) |
A | d1ug9a3 | All beta proteins | Immunoglobulin-like beta-sandwich | CBD9-like | Glucodextranase, domain C | Glucodextranase, domain C | (Arthrobacter globiformis ) [TaxId: 1665 ], | SCOPe (2.08) |
A | d1ug9a2 | All beta proteins | Immunoglobulin-like beta-sandwich | E set domains | E-set domains of sugar-utilizing enzymes | Glucodextranase, domain B | (Arthrobacter globiformis ) [TaxId: 1665 ], | SCOPe (2.08) |
A | d1ug9a4 | All beta proteins | Supersandwich | Galactose mutarotase-like | Bacterial glucoamylase N-terminal domain-like | Glucodextranase, domain N | (Arthrobacter globiformis ) [TaxId: 1665 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Galactose mutarotase-like | 8041883 | 3000035 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Six-hairpin glycosidases | 8041882 | 3000970 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | E set domains | 8054949 | 3000070 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | CBD9-like | 8055283 | 3002050 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Glucodextran_C | e1ug9A1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Glucodextran_C | ECOD (1.6) |
A | Glucodextran_B | e1ug9A2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Glucodextran_B | ECOD (1.6) |
A | Glucodextran_N | e1ug9A3 | A: beta sandwiches | X: Glycosyl hydrolase domain-like | H: supersandwich (From Topology) | T: supersandwich | F: Glucodextran_N | ECOD (1.6) |
A | Glyco_hydro_15 | e1ug9A4 | A: alpha superhelices | X: Repetitive alpha hairpins | H: alpha/alpha toroid (From Topology) | T: alpha/alpha toroid | F: Glyco_hydro_15 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.70.98.10 | Mainly Beta | Distorted Sandwich | Beta-galactosidase | Chain A, domain 5 | CATH (4.3.0) |
A | 1.50.10.10 | Mainly Alpha | Alpha/alpha barrel | Glycosyltransferase | CATH (4.3.0) | |
A | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
A | 2.60.40.1190 | Mainly Beta | Sandwich | Immunoglobulin-like | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF09136 | Glucodextranase, domain B (Glucodextran_B) | Glucodextranase, domain B | Members of this family adopt a structure consisting of seven/eight-strand antiparallel beta-sheets, in a Greek-key topology, similar to the immunoglobulin beta-sandwich fold. They act as cell wall anchors, where they interact with the S-layer present ... | Domain | |
PF09137 | Glucodextranase, domain N (Glucodextran_N) | Glucodextranase, domain N | Members of this family, which are uniquely found in bacterial and archaeal glucoamylases and glucodextranases, adopt a structure consisting of 17 antiparallel beta-strands. These beta-strands are divided into two beta-sheets, and one of the beta-shee ... | Domain | |
PF00723 | Glycosyl hydrolases family 15 (Glyco_hydro_15) | Glycosyl hydrolases family 15 | - | Repeat | |
PF09985 | C-terminal binding-module, SLH-like, of glucodextranase (Glucodextran_C) | C-terminal binding-module, SLH-like, of glucodextranase | Glucodextran_C is the C-terminal domain of glucodextranase-like proteins found in various prokaryotic membrane-anchored proteins. It shows homology to the carbohydrate-binding unit of some glycosidases [1]. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR006425 | Glucoamylase, bacterial | Family | |
IPR008928 | Six-hairpin glycosidase superfamily | Homologous Superfamily | |
IPR019248 | Glucodextranase-like, C-terminal | Domain | |
IPR012341 | Six-hairpin glycosidase-like superfamily | Homologous Superfamily | |
IPR015220 | Glucodextranase, N-terminal | Domain | |
IPR046966 | Glucoamylase, active site | Conserved Site | |
IPR013783 | Immunoglobulin-like fold | Homologous Superfamily | |
IPR014756 | Immunoglobulin E-set | Homologous Superfamily | |
IPR014718 | Glycoside hydrolase-type carbohydrate-binding | Homologous Superfamily | |
IPR011613 | GH15-like domain | Domain | |
IPR011013 | Galactose mutarotase-like domain superfamily | Homologous Superfamily |