1TOC | pdb_00001toc

STRUCTURE OF SERINE PROTEINASE

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
J [auth G]d1toc.4 All beta proteins Trypsin-like serine proteases Trypsin-like serine proteases Eukaryotic proteases Thrombin cattle (Bos taurus ) [TaxId: 9913 ], SCOPe (2.08)
G [auth E]d1toc.3 All beta proteins Trypsin-like serine proteases Trypsin-like serine proteases Eukaryotic proteases Thrombin cattle (Bos taurus ) [TaxId: 9913 ], SCOPe (2.08)
D [auth C]d1toc.2 All beta proteins Trypsin-like serine proteases Trypsin-like serine proteases Eukaryotic proteases Thrombin cattle (Bos taurus ) [TaxId: 9913 ], SCOPe (2.08)
Ad1toc.1 All beta proteins Trypsin-like serine proteases Trypsin-like serine proteases Eukaryotic proteases Thrombin cattle (Bos taurus ) [TaxId: 9913 ], SCOPe (2.08)
K [auth H]d1toc.4 All beta proteins Trypsin-like serine proteases Trypsin-like serine proteases Eukaryotic proteases Thrombin cattle (Bos taurus ) [TaxId: 9913 ], SCOPe (2.08)
H [auth F]d1toc.3 All beta proteins Trypsin-like serine proteases Trypsin-like serine proteases Eukaryotic proteases Thrombin cattle (Bos taurus ) [TaxId: 9913 ], SCOPe (2.08)
E [auth D]d1toc.2 All beta proteins Trypsin-like serine proteases Trypsin-like serine proteases Eukaryotic proteases Thrombin cattle (Bos taurus ) [TaxId: 9913 ], SCOPe (2.08)
Bd1toc.1 All beta proteins Trypsin-like serine proteases Trypsin-like serine proteases Eukaryotic proteases Thrombin cattle (Bos taurus ) [TaxId: 9913 ], SCOPe (2.08)
L [auth U]d1tocu1 Small proteins BPTI-like BPTI-like Soft tick anticoagulant proteins Ornithodorin (Ornithodoros moubata ) [TaxId: 6938 ], SCOPe (2.08)
I [auth T]d1toct1 Small proteins BPTI-like BPTI-like Soft tick anticoagulant proteins Ornithodorin (Ornithodoros moubata ) [TaxId: 6938 ], SCOPe (2.08)
F [auth S]d1tocs1 Small proteins BPTI-like BPTI-like Soft tick anticoagulant proteins Ornithodorin (Ornithodoros moubata ) [TaxId: 6938 ], SCOPe (2.08)
C [auth R]d1tocr1 Small proteins BPTI-like BPTI-like Soft tick anticoagulant proteins Ornithodorin (Ornithodoros moubata ) [TaxId: 6938 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
L [auth U]SCOP2B SuperfamilyBPTI-like 8038567 3000628 SCOP2B (2022-06-29)
L [auth U]SCOP2B SuperfamilyBPTI-like 8038570 3000628 SCOP2B (2022-06-29)
I [auth T]SCOP2B SuperfamilyBPTI-like 8038570 3000628 SCOP2B (2022-06-29)
I [auth T]SCOP2B SuperfamilyBPTI-like 8038567 3000628 SCOP2B (2022-06-29)
F [auth S]SCOP2B SuperfamilyBPTI-like 8038570 3000628 SCOP2B (2022-06-29)
F [auth S]SCOP2B SuperfamilyBPTI-like 8038567 3000628 SCOP2B (2022-06-29)
C [auth R]SCOP2 FamilySoft tick anticoagulant proteins 8026188 4003353 SCOP2 (2022-06-29)
C [auth R]SCOP2 FamilySoft tick anticoagulant proteins 8026191 4003353 SCOP2 (2022-06-29)
C [auth R]SCOP2 SuperfamilyBPTI-like 8038567 3000628 SCOP2 (2022-06-29)
C [auth R]SCOP2 SuperfamilyBPTI-like 8038570 3000628 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
J [auth G]Flu_M2e1tocG1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Flu_M2ECOD (v295)
G [auth E]Flu_M2e1tocE1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Flu_M2ECOD (v295)
D [auth C]Flu_M2e1tocC1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Flu_M2ECOD (v295)
AFlu_M2e1tocA1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Flu_M2ECOD (v295)
K [auth H]Flu_M2e1tocH1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Flu_M2ECOD (v295)
H [auth F]Flu_M2e1tocF1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Flu_M2ECOD (v295)
E [auth D]Flu_M2e1tocD1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Flu_M2ECOD (v295)
BFlu_M2e1tocB1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Flu_M2ECOD (v295)
L [auth U]zf-C2H2e1tocU2 A: alpha arraysX: EGF-likeH: EGF-relatedT: EGF/LamininF: zf-C2H2ECOD (v295)
I [auth T]zf-C2H2e1tocT2 A: alpha arraysX: EGF-likeH: EGF-relatedT: EGF/LamininF: zf-C2H2ECOD (v295)
F [auth S]zf-C2H2e1tocS2 A: alpha arraysX: EGF-likeH: EGF-relatedT: EGF/LamininF: zf-C2H2ECOD (v295)
C [auth R]Kunitz_BPTIe1tocR2 A: few secondary structure elementsX: BPTI-likeH: BPTI-likeT: BPTI-likeF: Kunitz_BPTIECOD (v295)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
K [auth H]2.40.10.10 Mainly Beta Beta Barrel Thrombin, subunit H Trypsin-like serine proteasesCATH (4.3.0)
H [auth F]2.40.10.10 Mainly Beta Beta Barrel Thrombin, subunit H Trypsin-like serine proteasesCATH (4.3.0)
E [auth D]2.40.10.10 Mainly Beta Beta Barrel Thrombin, subunit H Trypsin-like serine proteasesCATH (4.3.0)
B2.40.10.10 Mainly Beta Beta Barrel Thrombin, subunit H Trypsin-like serine proteasesCATH (4.3.0)
L [auth U]4.10.410.10 Few Secondary Structures Irregular Factor Xa Inhibitor Pancreatic trypsin inhibitor Kunitz domainCATH (4.3.0)
I [auth T]4.10.410.10 Few Secondary Structures Irregular Factor Xa Inhibitor Pancreatic trypsin inhibitor Kunitz domainCATH (4.3.0)
F [auth S]4.10.410.10 Few Secondary Structures Irregular Factor Xa Inhibitor Pancreatic trypsin inhibitor Kunitz domainCATH (4.3.0)
C [auth R]4.10.410.10 Few Secondary Structures Irregular Factor Xa Inhibitor Pancreatic trypsin inhibitor Kunitz domainCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B,
E [auth D],
H [auth F],
K [auth H]		PF00089Trypsin (Trypsin)TrypsinDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A,
D [auth C],
G [auth E],
J [auth G]		THROMBIN
B,
E [auth D],
H [auth F],
K [auth H]		THROMBIN
C [auth R],
F [auth S],
I [auth T],
L [auth U]		ORNITHODORIN -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A,
D [auth C],
G [auth E],
J [auth G]		IPR018992Thrombin light chainDomain
A,
D [auth C],
G [auth E],
J [auth G]		IPR000294Gamma-carboxyglutamic acid-rich (GLA) domainDomain
A,
D [auth C],
G [auth E],
J [auth G]		IPR037111Thrombin light chain domain superfamilyHomologous Superfamily
A,
D [auth C],
G [auth E],
J [auth G]		IPR051659Serine Protease S1 Domain-Containing ProteinFamily
A,
D [auth C],
G [auth E],
J [auth G]		IPR003966Prothrombin/thrombinFamily
A,
D [auth C],
G [auth E],
J [auth G]		IPR018056Kringle, conserved siteConserved Site
A,
D [auth C],
G [auth E],
J [auth G]		IPR018114Serine protease-like, trypsin family, histidine active siteActive Site
A,
D [auth C],
G [auth E],
J [auth G]		IPR043504Peptidase_S1_PA_chymotrypsinUnknown
A,
D [auth C],
G [auth E],
J [auth G]		IPR013806Kringle-like foldHomologous Superfamily
A,
D [auth C],
G [auth E],
J [auth G]		IPR038178Kringle superfamilyHomologous Superfamily
A,
D [auth C],
G [auth E],
J [auth G]		IPR009003Peptidase S1, PA clanHomologous Superfamily
A,
D [auth C],
G [auth E],
J [auth G]		IPR001314Peptidase S1A, chymotrypsin familyFamily
A,
D [auth C],
G [auth E],
J [auth G]		IPR033116Serine proteases, trypsin family, serine active siteActive Site
A,
D [auth C],
G [auth E],
J [auth G]		IPR001254Serine proteases, trypsin domainDomain
A,
D [auth C],
G [auth E],
J [auth G]		IPR035972Gamma-carboxyglutamic acid-rich (GLA) domain superfamilyHomologous Superfamily
A,
D [auth C],
G [auth E],
J [auth G]		IPR000001KringleDomain
B,
E [auth D],
H [auth F],
K [auth H]		IPR018992Thrombin light chainDomain
B,
E [auth D],
H [auth F],
K [auth H]		IPR000294Gamma-carboxyglutamic acid-rich (GLA) domainDomain
B,
E [auth D],
H [auth F],
K [auth H]		IPR037111Thrombin light chain domain superfamilyHomologous Superfamily
B,
E [auth D],
H [auth F],
K [auth H]		IPR051659Serine Protease S1 Domain-Containing ProteinFamily
B,
E [auth D],
H [auth F],
K [auth H]		IPR003966Prothrombin/thrombinFamily
B,
E [auth D],
H [auth F],
K [auth H]		IPR018056Kringle, conserved siteConserved Site
B,
E [auth D],
H [auth F],
K [auth H]		IPR018114Serine protease-like, trypsin family, histidine active siteActive Site
B,
E [auth D],
H [auth F],
K [auth H]		IPR043504Peptidase_S1_PA_chymotrypsinUnknown
B,
E [auth D],
H [auth F],
K [auth H]		IPR013806Kringle-like foldHomologous Superfamily
B,
E [auth D],
H [auth F],
K [auth H]		IPR038178Kringle superfamilyHomologous Superfamily
B,
E [auth D],
H [auth F],
K [auth H]		IPR009003Peptidase S1, PA clanHomologous Superfamily
B,
E [auth D],
H [auth F],
K [auth H]		IPR001314Peptidase S1A, chymotrypsin familyFamily
B,
E [auth D],
H [auth F],
K [auth H]		IPR033116Serine proteases, trypsin family, serine active siteActive Site
B,
E [auth D],
H [auth F],
K [auth H]		IPR001254Serine proteases, trypsin domainDomain
B,
E [auth D],
H [auth F],
K [auth H]		IPR035972Gamma-carboxyglutamic acid-rich (GLA) domain superfamilyHomologous Superfamily
B,
E [auth D],
H [auth F],
K [auth H]		IPR000001KringleDomain
C [auth R],
F [auth S],
I [auth T],
L [auth U]		IPR036880Pancreatic trypsin inhibitor Kunitz domain superfamilyHomologous Superfamily