Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
C [auth 3]SCOP2 FamilyPicornaviridae-like VP (VP1, VP2, VP3 and VP4) 8028634 4003466 SCOP2 (2022-06-29)
C [auth 3]SCOP2 SuperfamilyPositive stranded ssRNA viruses-like 8041013 3000918 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth 1]Rhv_5e1tme11 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Rhv_5ECOD (1.6)
C [auth 3]Rhv_3e1tme31 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Rhv_3ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A [auth 1]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
B [auth 2]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
C [auth 3]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth 1]PF22663Picornavirus coat protein (Rhv_5)Picornavirus coat proteinThis domain is found in capsid proteins from picornavirus, such as enterovirus, rhinovirus and foot-and-mouth disease virus [1-5].Domain
B [auth 2]PF00073picornavirus capsid protein (Rhv)picornavirus capsid proteinCAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornavi ...CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornaviruses. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids. They include rhinovirus (common cold) and poliovirus. Common structure is an 8-stranded beta sandwich. Variations (one or two extra strands) occur.
Domain
C [auth 3]PF00073picornavirus capsid protein (Rhv)picornavirus capsid proteinCAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornavi ...CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornaviruses. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids. They include rhinovirus (common cold) and poliovirus. Common structure is an 8-stranded beta sandwich. Variations (one or two extra strands) occur.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth 1]THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (SUBUNIT VP1)
B [auth 2]THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (SUBUNIT VP2)
C [auth 3]THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (SUBUNIT VP3)
D [auth 4]THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (SUBUNIT VP4)

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth 1]IPR015031Capsid protein VP4, PicornavirusDomain
A [auth 1]IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
A [auth 1]IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
A [auth 1]IPR000199Peptidase C3A/C3B, picornaviralDomain
A [auth 1]IPR001676Picornavirus capsidDomain
A [auth 1]IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
A [auth 1]IPR029053Viral coat protein subunitHomologous Superfamily
A [auth 1]IPR009003Peptidase S1, PA clanHomologous Superfamily
A [auth 1]IPR004004Helicase/polymerase/peptidase polyprotein, Calicivirus-typeFamily
A [auth 1]IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
A [auth 1]IPR044067Picornavirales 3C/3C-like protease domainDomain
A [auth 1]IPR033703Picornavirus/Calicivirus coat proteinDomain
A [auth 1]IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
A [auth 1]IPR007094RNA-directed RNA polymerase, catalytic domainDomain
A [auth 1]IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
A [auth 1]IPR037080Capsid protein VP4 superfamily, PicornavirusHomologous Superfamily
B [auth 2]IPR015031Capsid protein VP4, PicornavirusDomain
B [auth 2]IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
B [auth 2]IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
B [auth 2]IPR000199Peptidase C3A/C3B, picornaviralDomain
B [auth 2]IPR001676Picornavirus capsidDomain
B [auth 2]IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
B [auth 2]IPR029053Viral coat protein subunitHomologous Superfamily
B [auth 2]IPR009003Peptidase S1, PA clanHomologous Superfamily
B [auth 2]IPR004004Helicase/polymerase/peptidase polyprotein, Calicivirus-typeFamily
B [auth 2]IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
B [auth 2]IPR044067Picornavirales 3C/3C-like protease domainDomain
B [auth 2]IPR033703Picornavirus/Calicivirus coat proteinDomain
B [auth 2]IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
B [auth 2]IPR007094RNA-directed RNA polymerase, catalytic domainDomain
B [auth 2]IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
B [auth 2]IPR037080Capsid protein VP4 superfamily, PicornavirusHomologous Superfamily
C [auth 3]IPR015031Capsid protein VP4, PicornavirusDomain
C [auth 3]IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
C [auth 3]IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
C [auth 3]IPR000199Peptidase C3A/C3B, picornaviralDomain
C [auth 3]IPR001676Picornavirus capsidDomain
C [auth 3]IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
C [auth 3]IPR029053Viral coat protein subunitHomologous Superfamily
C [auth 3]IPR009003Peptidase S1, PA clanHomologous Superfamily
C [auth 3]IPR004004Helicase/polymerase/peptidase polyprotein, Calicivirus-typeFamily
C [auth 3]IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
C [auth 3]IPR044067Picornavirales 3C/3C-like protease domainDomain
C [auth 3]IPR033703Picornavirus/Calicivirus coat proteinDomain
C [auth 3]IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
C [auth 3]IPR007094RNA-directed RNA polymerase, catalytic domainDomain
C [auth 3]IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
C [auth 3]IPR037080Capsid protein VP4 superfamily, PicornavirusHomologous Superfamily
D [auth 4]IPR015031Capsid protein VP4, PicornavirusDomain
D [auth 4]IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
D [auth 4]IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
D [auth 4]IPR000199Peptidase C3A/C3B, picornaviralDomain
D [auth 4]IPR001676Picornavirus capsidDomain
D [auth 4]IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
D [auth 4]IPR029053Viral coat protein subunitHomologous Superfamily
D [auth 4]IPR009003Peptidase S1, PA clanHomologous Superfamily
D [auth 4]IPR004004Helicase/polymerase/peptidase polyprotein, Calicivirus-typeFamily
D [auth 4]IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
D [auth 4]IPR044067Picornavirales 3C/3C-like protease domainDomain
D [auth 4]IPR033703Picornavirus/Calicivirus coat proteinDomain
D [auth 4]IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
D [auth 4]IPR007094RNA-directed RNA polymerase, catalytic domainDomain
D [auth 4]IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
D [auth 4]IPR037080Capsid protein VP4 superfamily, PicornavirusHomologous Superfamily