1TLY
Tsx structure
External Resource: Annotation
- Domain Annotation: SCOP/SCOPe Classification
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Membrane Protein Annotation: OPM
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: MemProtMD
- Membrane Protein Annotation: mpstruc
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1tlya1 | Membrane and cell surface proteins and peptides | Transmembrane beta-barrels | Tsx-like channel | Tsx-like channel | Nucleoside-specific channel-forming protein tsx (NupA) | (Escherichia coli ) [TaxId: 562 ], | SCOPe (2.08) |
A | d1tlya2 | Artifacts | Tags | Tags | Tags | C-terminal Tags | (Escherichia coli ) [TaxId: 562 ], | SCOPe (2.08) |
B | d1tlyb_ | Membrane and cell surface proteins and peptides | Transmembrane beta-barrels | Tsx-like channel | Tsx-like channel | Nucleoside-specific channel-forming protein tsx (NupA) | (Escherichia coli ) [TaxId: 562 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Channel_Tsx | e1tlyA1 | A: beta barrels | X: Outer membrane meander beta-barrels | H: Tsx-like channel (From Topology) | T: Tsx-like channel | F: Channel_Tsx | ECOD (1.6) |
B | Channel_Tsx | e1tlyB1 | A: beta barrels | X: Outer membrane meander beta-barrels | H: Tsx-like channel (From Topology) | T: Tsx-like channel | F: Channel_Tsx | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.40.230.20 | Mainly Beta | Beta Barrel | Outer membrane phospholipase (ompla) | Chain C | CATH (4.3.0) |
B | 2.40.230.20 | Mainly Beta | Beta Barrel | Outer membrane phospholipase (ompla) | Chain C | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF03502 | Nucleoside-specific channel-forming protein, Tsx (Channel_Tsx) | Nucleoside-specific channel-forming protein, Tsx | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR018013 | Nucleoside-specific channel-forming protein, Tsx-like | Family | |
IPR036777 | Nucleoside-specific channel-forming protein, Tsx-like superfamily | Homologous Superfamily | |
IPR003055 | Nucleoside-specific channel-forming protein Tsx | Family |
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Transmembrane | Beta-barrel transmembrane | Nucleoside-specific channel-forming membrane porin (Tsx) (n=12,S=16) | Nucleoside transporter Tsx |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Chains | External Link | Comment |
---|---|---|
PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
Chains | External Link | Comment |
---|---|---|
MemProtMD | Annotated as membrane protein by MemProtMD |
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
Chains | Resource Link | Group | Subgroup | Protein |
---|---|---|---|---|
mpstruc | TRANSMEMBRANE PROTEINS: BETA-BARREL | Beta-Barrel Membrane Proteins: Monomeric/Dimeric | Tsx nucleoside transporter (apoprotein) |