1TJL
Crystal structure of transcription factor DksA from E. coli
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
E | SCOP2B Superfamily | DnaK suppressor protein DksA, alpha-hairpin domain | 8040228 | 3000986 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8040230 | 3000068 | SCOP2B (2022-06-29) |
I | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8040230 | 3000068 | SCOP2B (2022-06-29) |
I | SCOP2B Superfamily | DnaK suppressor protein DksA, alpha-hairpin domain | 8040228 | 3000986 | SCOP2B (2022-06-29) |
A | SCOP2 Family | DnaK suppressor protein DksA, alpha-hairpin domain | 8027849 | 4002240 | SCOP2 (2022-06-29) |
A | SCOP2 Family | Prokaryotic DksA/TraR C4-type zinc finger | 8027851 | 4003090 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | DnaK suppressor protein DksA, alpha-hairpin domain | 8040228 | 3000986 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8040230 | 3000068 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | DnaK suppressor protein DksA, alpha-hairpin domain | 8040228 | 3000986 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8040230 | 3000068 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | DnaK suppressor protein DksA, alpha-hairpin domain | 8040228 | 3000986 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8040230 | 3000068 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | DnaK suppressor protein DksA, alpha-hairpin domain | 8040228 | 3000986 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8040230 | 3000068 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8040230 | 3000068 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | DnaK suppressor protein DksA, alpha-hairpin domain | 8040228 | 3000986 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8040230 | 3000068 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | DnaK suppressor protein DksA, alpha-hairpin domain | 8040228 | 3000986 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | DnaK suppressor protein DksA, alpha-hairpin domain | 8040228 | 3000986 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8040230 | 3000068 | SCOP2B (2022-06-29) |
J | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8040230 | 3000068 | SCOP2B (2022-06-29) |
J | SCOP2B Superfamily | DnaK suppressor protein DksA, alpha-hairpin domain | 8040228 | 3000986 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
E | dksA | e1tjlE1 | A: alpha bundles | X: Long alpha-hairpin | H: DnaK suppressor protein DksA, alpha-hairpin domain (From Topology) | T: DnaK suppressor protein DksA, alpha-hairpin domain | F: dksA | ECOD (1.6) |
E | zf-dskA_traR | e1tjlE2 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: zf-dskA_traR | ECOD (1.6) |
I | dksA | e1tjlI1 | A: alpha bundles | X: Long alpha-hairpin | H: DnaK suppressor protein DksA, alpha-hairpin domain (From Topology) | T: DnaK suppressor protein DksA, alpha-hairpin domain | F: dksA | ECOD (1.6) |
I | zf-dskA_traR | e1tjlI2 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: zf-dskA_traR | ECOD (1.6) |
A | dksA | e1tjlA1 | A: alpha bundles | X: Long alpha-hairpin | H: DnaK suppressor protein DksA, alpha-hairpin domain (From Topology) | T: DnaK suppressor protein DksA, alpha-hairpin domain | F: dksA | ECOD (1.6) |
A | zf-dskA_traR | e1tjlA2 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: zf-dskA_traR | ECOD (1.6) |
B | dksA | e1tjlB1 | A: alpha bundles | X: Long alpha-hairpin | H: DnaK suppressor protein DksA, alpha-hairpin domain (From Topology) | T: DnaK suppressor protein DksA, alpha-hairpin domain | F: dksA | ECOD (1.6) |
B | zf-dskA_traR | e1tjlB2 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: zf-dskA_traR | ECOD (1.6) |
C | dksA | e1tjlC1 | A: alpha bundles | X: Long alpha-hairpin | H: DnaK suppressor protein DksA, alpha-hairpin domain (From Topology) | T: DnaK suppressor protein DksA, alpha-hairpin domain | F: dksA | ECOD (1.6) |
C | zf-dskA_traR | e1tjlC2 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: zf-dskA_traR | ECOD (1.6) |
D | dksA | e1tjlD1 | A: alpha bundles | X: Long alpha-hairpin | H: DnaK suppressor protein DksA, alpha-hairpin domain (From Topology) | T: DnaK suppressor protein DksA, alpha-hairpin domain | F: dksA | ECOD (1.6) |
D | zf-dskA_traR | e1tjlD2 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: zf-dskA_traR | ECOD (1.6) |
F | dksA | e1tjlF1 | A: alpha bundles | X: Long alpha-hairpin | H: DnaK suppressor protein DksA, alpha-hairpin domain (From Topology) | T: DnaK suppressor protein DksA, alpha-hairpin domain | F: dksA | ECOD (1.6) |
F | zf-dskA_traR | e1tjlF2 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: zf-dskA_traR | ECOD (1.6) |
G | dksA | e1tjlG1 | A: alpha bundles | X: Long alpha-hairpin | H: DnaK suppressor protein DksA, alpha-hairpin domain (From Topology) | T: DnaK suppressor protein DksA, alpha-hairpin domain | F: dksA | ECOD (1.6) |
G | zf-dskA_traR | e1tjlG2 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: zf-dskA_traR | ECOD (1.6) |
H | dksA | e1tjlH1 | A: alpha bundles | X: Long alpha-hairpin | H: DnaK suppressor protein DksA, alpha-hairpin domain (From Topology) | T: DnaK suppressor protein DksA, alpha-hairpin domain | F: dksA | ECOD (1.6) |
H | zf-dskA_traR | e1tjlH2 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: zf-dskA_traR | ECOD (1.6) |
J | dksA | e1tjlJ1 | A: alpha bundles | X: Long alpha-hairpin | H: DnaK suppressor protein DksA, alpha-hairpin domain (From Topology) | T: DnaK suppressor protein DksA, alpha-hairpin domain | F: dksA | ECOD (1.6) |
J | zf-dskA_traR | e1tjlJ2 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: zf-dskA_traR | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF21157 | DnaK suppressor protein DksA, N-terminal domain (DksA_N) | DnaK suppressor protein DksA, N-terminal domain | DksA is a transcription factor that directly binds RNA polymerase and controls the bacteria response to stress and starvation. DksA is all helical and comprises a coiled-coil (CC) and globular domains [1-4]. This is the N-terminal domain which extend ... | Domain | |
PF01258 | Prokaryotic dksA/traR C4-type zinc finger (zf-dskA_traR) | Prokaryotic dksA/traR C4-type zinc finger | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR020458 | Zinc finger, DksA/TraR C4-type conserved site | Conserved Site | |
IPR037187 | DksA, N-terminal domain superfamily | Homologous Superfamily | |
IPR000962 | Zinc finger, DksA/TraR C4-type | Domain | |
IPR020460 | Zinc finger, DksA/TraR C4-type, bacteria | Domain | |
IPR048489 | DnaK suppressor protein DksA, N-terminal domain | Domain | |
IPR012784 | RNA polymerase-binding transcription factor DksA | Family |