1T6J
Crystal Structure of Phenylalanine Ammonia Lyase from Rhodosporidium toruloides
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1t6ja_ | All alpha proteins | L-aspartase-like | L-aspartase-like | HAL/PAL-like | Phenylalanine ammonia-lyase, PAL | (Rhodotorula toruloides ) [TaxId: 5286 ], | SCOPe (2.08) |
B | d1t6jb_ | All alpha proteins | L-aspartase-like | L-aspartase-like | HAL/PAL-like | Phenylalanine ammonia-lyase, PAL | (Rhodotorula toruloides ) [TaxId: 5286 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF00221 | e1t6jA3 | A: alpha arrays | X: L-aspartase N-terminal domain-like (From Topology) | H: L-aspartase N-terminal domain-like (From Topology) | T: L-aspartase N-terminal domain-like | F: PF00221 | ECOD (1.6) |
A | F_UNCLASSIFIED | e1t6jA2 | A: alpha arrays | X: L-aspartase C-terminal domain-like (From Homology) | H: L-aspartase C-terminal domain-like | T: L-aspartase C-terminal domain-like | F: F_UNCLASSIFIED | ECOD (1.6) |
A | PF00221 | e1t6jA1 | A: alpha arrays | X: L-aspartase middle domain-like | H: L-aspartase middle domain-like (From Topology) | T: L-aspartase middle domain-like | F: PF00221 | ECOD (1.6) |
B | PF00221 | e1t6jB3 | A: alpha arrays | X: L-aspartase N-terminal domain-like (From Topology) | H: L-aspartase N-terminal domain-like (From Topology) | T: L-aspartase N-terminal domain-like | F: PF00221 | ECOD (1.6) |
B | F_UNCLASSIFIED | e1t6jB2 | A: alpha arrays | X: L-aspartase C-terminal domain-like (From Homology) | H: L-aspartase C-terminal domain-like | T: L-aspartase C-terminal domain-like | F: F_UNCLASSIFIED | ECOD (1.6) |
B | PF00221 | e1t6jB4 | A: alpha arrays | X: L-aspartase middle domain-like | H: L-aspartase middle domain-like (From Topology) | T: L-aspartase middle domain-like | F: PF00221 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.10.275.10 | Mainly Alpha | Orthogonal Bundle | Fumarase C | Chain B, domain 1 | CATH (4.3.0) |
A | 1.20.200.10 | Mainly Alpha | Up-down Bundle | Fumarase C | Chain A, domain 2 | CATH (4.3.0) |
A | 1.10.274.20 | Mainly Alpha | Orthogonal Bundle | Enzyme I | Chain A, domain 2 | CATH (4.3.0) |
B | 1.10.275.10 | Mainly Alpha | Orthogonal Bundle | Fumarase C | Chain B, domain 1 | CATH (4.3.0) |
B | 1.20.200.10 | Mainly Alpha | Up-down Bundle | Fumarase C | Chain A, domain 2 | CATH (4.3.0) |
B | 1.10.274.20 | Mainly Alpha | Orthogonal Bundle | Enzyme I | Chain A, domain 2 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00221 | Aromatic amino acid lyase (Lyase_aromatic) | Aromatic amino acid lyase | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR005922 | Phenylalanine ammonia-lyase | Family | |
IPR024083 | Fumarase/histidase, N-terminal | Homologous Superfamily | |
IPR001106 | Aromatic amino acid lyase | Family | |
IPR022313 | Phenylalanine/histidine ammonia-lyases, active site | Active Site | |
IPR008948 | L-Aspartase-like | Homologous Superfamily | |
IPR023144 | Phenylalanine ammonia-lyase, shielding domain superfamily | Homologous Superfamily |