1SDD
Crystal Structure of Bovine Factor Vai
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1sdda1 | All beta proteins | Cupredoxin-like | Cupredoxins | Multidomain cupredoxins | Coagulation factor V | (Bos taurus ) [TaxId: 9913 ], | SCOPe (2.08) |
B | d1sddb1 | All beta proteins | Cupredoxin-like | Cupredoxins | Multidomain cupredoxins | Coagulation factor V | (Bos taurus ) [TaxId: 9913 ], | SCOPe (2.08) |
B | d1sddb3 | All beta proteins | Galactose-binding domain-like | Galactose-binding domain-like | Discoidin domain (FA58C, coagulation factor 5/8 C-terminal domain) | C2 domain of factor V | (Bos taurus ) [TaxId: 9913 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Multidomain cupredoxins | 8026971 | 4002203 | SCOP2 (2022-06-29) |
A | SCOP2 Family | Multidomain cupredoxins | 8026972 | 4002203 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Cupredoxins | 8039350 | 3000886 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Cupredoxins | 8039351 | 3000886 | SCOP2 (2022-06-29) |
B | SCOP2 Family | Discoidin domain (fa58c, coagulation factor 5/8 c-terminal domain) | 8026974 | 4002473 | SCOP2 (2022-06-29) |
B | SCOP2 Family | Discoidin domain (fa58c, coagulation factor 5/8 c-terminal domain) | 8026976 | 4002473 | SCOP2 (2022-06-29) |
B | SCOP2 Superfamily | galactose-binding domain-like | 8039353 | 3000087 | SCOP2 (2022-06-29) |
B | SCOP2 Superfamily | galactose-binding domain-like | 8039355 | 3000087 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Cu-oxidase_2_1 | e1sddA2 | A: beta sandwiches | X: Cupredoxin-like | H: Cupredoxin-related (From Topology) | T: Cupredoxin-related | F: Cu-oxidase_2_1 | ECOD (1.6) |
A | Cu-oxidase_3_2 | e1sddA3 | A: beta sandwiches | X: Cupredoxin-like | H: Cupredoxin-related (From Topology) | T: Cupredoxin-related | F: Cu-oxidase_3_2 | ECOD (1.6) |
B | F5_F8_type_C | e1sddB1 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Galactose-binding domain-like | F: F5_F8_type_C | ECOD (1.6) |
B | Cu-oxidase_2_1 | e1sddB4 | A: beta sandwiches | X: Cupredoxin-like | H: Cupredoxin-related (From Topology) | T: Cupredoxin-related | F: Cu-oxidase_2_1 | ECOD (1.6) |
B | Cu-oxidase_3_2 | e1sddB3 | A: beta sandwiches | X: Cupredoxin-like | H: Cupredoxin-related (From Topology) | T: Cupredoxin-related | F: Cu-oxidase_3_2 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.60.40.420 | Mainly Beta | Sandwich | Immunoglobulin-like | Cupredoxins - blue copper proteins | CATH (4.3.0) |
B | 2.60.40.420 | Mainly Beta | Sandwich | Immunoglobulin-like | Cupredoxins - blue copper proteins | CATH (4.3.0) |
B | 2.60.120.260 | Mainly Beta | Sandwich | Jelly Rolls | Galactose-binding domain-like | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF07732 | Multicopper oxidase (Cu-oxidase_3) | Multicopper oxidase | This entry contains many divergent copper oxidase-like domains that are not recognised by the Pfam:PF00394 model. | Domain | |
PF00754 | F5/8 type C domain (F5_F8_type_C) | F5/8 type C domain | This domain is also known as the discoidin (DS) domain family [1]. | Domain | |
PF07732 | Multicopper oxidase (Cu-oxidase_3) | Multicopper oxidase | This entry contains many divergent copper oxidase-like domains that are not recognised by the Pfam:PF00394 model. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR033138 | Multicopper oxidases, conserved site | Conserved Site | |
IPR008979 | Galactose-binding-like domain superfamily | Homologous Superfamily | |
IPR011707 | Multicopper oxidase-like, N-terminal | Domain | |
IPR024715 | Coagulation factor 5/8-like | Family | |
IPR000421 | Coagulation factor 5/8, C-terminal domain | Domain | |
IPR008972 | Cupredoxin | Homologous Superfamily | |
IPR050633 | Neuropilin/Multicopper Oxidase/Coagulation Factor | Family | |
IPR009271 | Coagulation factor V, LSPD | Repeat | |
IPR033138 | Multicopper oxidases, conserved site | Conserved Site | |
IPR008979 | Galactose-binding-like domain superfamily | Homologous Superfamily | |
IPR011707 | Multicopper oxidase-like, N-terminal | Domain | |
IPR024715 | Coagulation factor 5/8-like | Family | |
IPR000421 | Coagulation factor 5/8, C-terminal domain | Domain | |
IPR008972 | Cupredoxin | Homologous Superfamily | |
IPR050633 | Neuropilin/Multicopper Oxidase/Coagulation Factor | Family | |
IPR009271 | Coagulation factor V, LSPD | Repeat |
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Monotopic/peripheral | All beta monotopic/peripheral | Galactose-binding domain-like | Discoidin domain |