1S0V
Structural basis for substrate selection by T7 RNA polymerase
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
M [auth A] | d1s0va_ | Multi-domain proteins (alpha and beta) | DNA/RNA polymerases | DNA/RNA polymerases | T7 RNA polymerase | T7 RNA polymerase | (Escherichia phage T7 ) [TaxId: 10760 ], | SCOPe (2.08) |
N [auth B] | d1s0vb_ | Multi-domain proteins (alpha and beta) | DNA/RNA polymerases | DNA/RNA polymerases | T7 RNA polymerase | T7 RNA polymerase | (Escherichia phage T7 ) [TaxId: 10760 ], | SCOPe (2.08) |
O [auth C] | d1s0vc_ | Multi-domain proteins (alpha and beta) | DNA/RNA polymerases | DNA/RNA polymerases | T7 RNA polymerase | T7 RNA polymerase | (Escherichia phage T7 ) [TaxId: 10760 ], | SCOPe (2.08) |
P [auth D] | d1s0vd_ | Multi-domain proteins (alpha and beta) | DNA/RNA polymerases | DNA/RNA polymerases | T7 RNA polymerase | T7 RNA polymerase | (Escherichia phage T7 ) [TaxId: 10760 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
M [auth A] | SCOP2B Superfamily | Nucleotide cyclase/DNA polymerase palm domain-like | 8037503 | 3001272 | SCOP2B (2021-05-27) |
M [auth A] | SCOP2B Superfamily | Nucleotide cyclase/DNA polymerase palm domain-like | 8037503 | 3001272 | SCOP2B (2021-05-27) |
N [auth B] | SCOP2B Superfamily | Nucleotide cyclase/DNA polymerase palm domain-like | 8037503 | 3001272 | SCOP2B (2021-05-27) |
N [auth B] | SCOP2B Superfamily | Nucleotide cyclase/DNA polymerase palm domain-like | 8037503 | 3001272 | SCOP2B (2021-05-27) |
O [auth C] | SCOP2B Superfamily | Nucleotide cyclase/DNA polymerase palm domain-like | 8037503 | 3001272 | SCOP2B (2021-05-27) |
O [auth C] | SCOP2B Superfamily | Nucleotide cyclase/DNA polymerase palm domain-like | 8037503 | 3001272 | SCOP2B (2021-05-27) |
P [auth D] | SCOP2B Superfamily | Nucleotide cyclase/DNA polymerase palm domain-like | 8037503 | 3001272 | SCOP2B (2021-05-27) |
P [auth D] | SCOP2B Superfamily | Nucleotide cyclase/DNA polymerase palm domain-like | 8037503 | 3001272 | SCOP2B (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
M [auth A] | PF14700 | e1s0vA6 | A: alpha arrays | X: HTH | H: HTH | T: HTH in T7 RNA polymerase | F: PF14700 | ECOD (1.6) |
M [auth A] | PF00940 | e1s0vA1 | A: alpha arrays | X: helical bundle in Bacillus stearothermophilus-like DNA polymerase I (From Topology) | H: helical bundle in Bacillus stearothermophilus-like DNA polymerase I (From Topology) | T: helical bundle in Bacillus stearothermophilus-like DNA polymerase I | F: PF00940 | ECOD (1.6) |
M [auth A] | PF00940 | e1s0vA3 | A: alpha arrays | X: inserted helical bundle subdomain in T7 RNA polymerase (From Topology) | H: inserted helical bundle subdomain in T7 RNA polymerase (From Topology) | T: inserted helical bundle subdomain in T7 RNA polymerase | F: PF00940 | ECOD (1.6) |
M [auth A] | PF14700 | e1s0vA2 | A: alpha bundles | X: fingers domain in bacteriophage RB69-like DNA polymerase I (From Topology) | H: fingers domain in bacteriophage RB69-like DNA polymerase I (From Topology) | T: fingers domain in bacteriophage RB69-like DNA polymerase I | F: PF14700 | ECOD (1.6) |
M [auth A] | PF00940 | e1s0vA5 | A: a+b two layers | X: Alpha-beta plaits | H: Adenylyl and guanylyl cyclase catalytic domain-like | T: Adenylyl and guanylyl cyclase catalytic domain-like | F: PF00940 | ECOD (1.6) |
N [auth B] | PF14700 | e1s0vB2 | A: alpha arrays | X: HTH | H: HTH | T: HTH in T7 RNA polymerase | F: PF14700 | ECOD (1.6) |
N [auth B] | PF00940 | e1s0vB1 | A: alpha arrays | X: helical bundle in Bacillus stearothermophilus-like DNA polymerase I (From Topology) | H: helical bundle in Bacillus stearothermophilus-like DNA polymerase I (From Topology) | T: helical bundle in Bacillus stearothermophilus-like DNA polymerase I | F: PF00940 | ECOD (1.6) |
N [auth B] | PF00940 | e1s0vB3 | A: alpha arrays | X: inserted helical bundle subdomain in T7 RNA polymerase (From Topology) | H: inserted helical bundle subdomain in T7 RNA polymerase (From Topology) | T: inserted helical bundle subdomain in T7 RNA polymerase | F: PF00940 | ECOD (1.6) |
N [auth B] | PF14700 | e1s0vB4 | A: alpha bundles | X: fingers domain in bacteriophage RB69-like DNA polymerase I (From Topology) | H: fingers domain in bacteriophage RB69-like DNA polymerase I (From Topology) | T: fingers domain in bacteriophage RB69-like DNA polymerase I | F: PF14700 | ECOD (1.6) |
N [auth B] | PF00940 | e1s0vB5 | A: a+b two layers | X: Alpha-beta plaits | H: Adenylyl and guanylyl cyclase catalytic domain-like | T: Adenylyl and guanylyl cyclase catalytic domain-like | F: PF00940 | ECOD (1.6) |
O [auth C] | PF14700 | e1s0vC4 | A: alpha arrays | X: HTH | H: HTH | T: HTH in T7 RNA polymerase | F: PF14700 | ECOD (1.6) |
O [auth C] | PF00940 | e1s0vC1 | A: alpha arrays | X: helical bundle in Bacillus stearothermophilus-like DNA polymerase I (From Topology) | H: helical bundle in Bacillus stearothermophilus-like DNA polymerase I (From Topology) | T: helical bundle in Bacillus stearothermophilus-like DNA polymerase I | F: PF00940 | ECOD (1.6) |
O [auth C] | PF00940 | e1s0vC3 | A: alpha arrays | X: inserted helical bundle subdomain in T7 RNA polymerase (From Topology) | H: inserted helical bundle subdomain in T7 RNA polymerase (From Topology) | T: inserted helical bundle subdomain in T7 RNA polymerase | F: PF00940 | ECOD (1.6) |
O [auth C] | PF14700 | e1s0vC2 | A: alpha bundles | X: fingers domain in bacteriophage RB69-like DNA polymerase I (From Topology) | H: fingers domain in bacteriophage RB69-like DNA polymerase I (From Topology) | T: fingers domain in bacteriophage RB69-like DNA polymerase I | F: PF14700 | ECOD (1.6) |
O [auth C] | PF00940 | e1s0vC5 | A: a+b two layers | X: Alpha-beta plaits | H: Adenylyl and guanylyl cyclase catalytic domain-like | T: Adenylyl and guanylyl cyclase catalytic domain-like | F: PF00940 | ECOD (1.6) |
P [auth D] | PF14700 | e1s0vD6 | A: alpha arrays | X: HTH | H: HTH | T: HTH in T7 RNA polymerase | F: PF14700 | ECOD (1.6) |
P [auth D] | PF00940 | e1s0vD1 | A: alpha arrays | X: helical bundle in Bacillus stearothermophilus-like DNA polymerase I (From Topology) | H: helical bundle in Bacillus stearothermophilus-like DNA polymerase I (From Topology) | T: helical bundle in Bacillus stearothermophilus-like DNA polymerase I | F: PF00940 | ECOD (1.6) |
P [auth D] | PF00940 | e1s0vD3 | A: alpha arrays | X: inserted helical bundle subdomain in T7 RNA polymerase (From Topology) | H: inserted helical bundle subdomain in T7 RNA polymerase (From Topology) | T: inserted helical bundle subdomain in T7 RNA polymerase | F: PF00940 | ECOD (1.6) |
P [auth D] | PF14700 | e1s0vD4 | A: alpha bundles | X: fingers domain in bacteriophage RB69-like DNA polymerase I (From Topology) | H: fingers domain in bacteriophage RB69-like DNA polymerase I (From Topology) | T: fingers domain in bacteriophage RB69-like DNA polymerase I | F: PF14700 | ECOD (1.6) |
P [auth D] | PF00940 | e1s0vD5 | A: a+b two layers | X: Alpha-beta plaits | H: Adenylyl and guanylyl cyclase catalytic domain-like | T: Adenylyl and guanylyl cyclase catalytic domain-like | F: PF00940 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
M [auth A], N [auth B], O [auth C], P [auth D] | PF14700 | DNA-directed RNA polymerase N-terminal (RPOL_N) | DNA-directed RNA polymerase N-terminal | This is the N-terminal domain of DNA-directed RNA polymerase. This domain has a role in interaction with regions of upstream promoter DNA and the nascent RNA chain, leading to the processivity of the enzyme [1]. In order to make mRNA transcripts the ... | Domain |
M [auth A], N [auth B], O [auth C], P [auth D] | PF00940 | DNA-dependent RNA polymerase (RNA_pol) | DNA-dependent RNA polymerase | - | Family |