1RQ0
Crystal structure of peptide releasing factor 1
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1rq0a_ | Multi-domain proteins (alpha and beta) | Release factor | Release factor | Release factor | Peptide chain release factor 1, RF1 | (Thermotoga maritima ) [TaxId: 2336 ], | SCOPe (2.08) |
B | d1rq0b_ | Multi-domain proteins (alpha and beta) | Release factor | Release factor | Release factor | Peptide chain release factor 1, RF1 | (Thermotoga maritima ) [TaxId: 2336 ], | SCOPe (2.08) |
C | d1rq0c_ | Multi-domain proteins (alpha and beta) | Release factor | Release factor | Release factor | Peptide chain release factor 1, RF1 | (Thermotoga maritima ) [TaxId: 2336 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | PCRF domain-like | 8026496 | 4002864 | SCOP2 (2022-06-29) |
A | SCOP2 Family | Peptidyl-tRNA hydrolase domain | 8054403 | 4002570 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | RNA-binding domain, RBD | 8054402 | 3000110 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Peptidyl-tRNA hydrolase domain-like | 8054404 | 3001421 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Release factor N-terminal domain-like | 8038875 | 3001827 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | RNA-binding domain, RBD | 8054402 | 3000110 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Peptidyl-tRNA hydrolase domain-like | 8054404 | 3001421 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Release factor N-terminal domain-like | 8038875 | 3001827 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Release factor N-terminal domain-like | 8038875 | 3001827 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | RNA-binding domain, RBD | 8054402 | 3000110 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Peptidyl-tRNA hydrolase domain-like | 8054404 | 3001421 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | EUF08088 | e1rq0A1 | A: alpha bundles | X: Release factor (Pfam 00472) N-terminal alpha helical domain (From Topology) | H: Release factor (Pfam 00472) N-terminal alpha helical domain (From Topology) | T: Release factor (Pfam 00472) N-terminal alpha helical domain | F: EUF08088 | ECOD (1.6) |
A | PCRF_C | e1rq0A2 | A: a+b two layers | X: Alpha-beta plaits | H: Ferredoxin-like domain in release factor (From Topology) | T: Ferredoxin-like domain in release factor | F: PCRF_C | ECOD (1.6) |
A | RF-1_N | e1rq0A3 | A: a+b two layers | X: dsRBD-like | H: Peptidyl-tRNA hydrolase domain-like (From Topology) | T: Peptidyl-tRNA hydrolase domain-like | F: RF-1_N | ECOD (1.6) |
A | RF-1_C | e1rq0A4 | A: a+b two layers | X: dsRBD-like | H: Peptidyl-tRNA hydrolase domain-like (From Topology) | T: Peptidyl-tRNA hydrolase domain-like | F: RF-1_C | ECOD (1.6) |
B | EUF08088 | e1rq0B1 | A: alpha bundles | X: Release factor (Pfam 00472) N-terminal alpha helical domain (From Topology) | H: Release factor (Pfam 00472) N-terminal alpha helical domain (From Topology) | T: Release factor (Pfam 00472) N-terminal alpha helical domain | F: EUF08088 | ECOD (1.6) |
B | PCRF_C | e1rq0B2 | A: a+b two layers | X: Alpha-beta plaits | H: Ferredoxin-like domain in release factor (From Topology) | T: Ferredoxin-like domain in release factor | F: PCRF_C | ECOD (1.6) |
B | RF-1_N | e1rq0B3 | A: a+b two layers | X: dsRBD-like | H: Peptidyl-tRNA hydrolase domain-like (From Topology) | T: Peptidyl-tRNA hydrolase domain-like | F: RF-1_N | ECOD (1.6) |
C | EUF08088 | e1rq0C1 | A: alpha bundles | X: Release factor (Pfam 00472) N-terminal alpha helical domain (From Topology) | H: Release factor (Pfam 00472) N-terminal alpha helical domain (From Topology) | T: Release factor (Pfam 00472) N-terminal alpha helical domain | F: EUF08088 | ECOD (1.6) |
C | PCRF_C | e1rq0C2 | A: a+b two layers | X: Alpha-beta plaits | H: Ferredoxin-like domain in release factor (From Topology) | T: Ferredoxin-like domain in release factor | F: PCRF_C | ECOD (1.6) |
C | RF-1_N | e1rq0C3 | A: a+b two layers | X: dsRBD-like | H: Peptidyl-tRNA hydrolase domain-like (From Topology) | T: Peptidyl-tRNA hydrolase domain-like | F: RF-1_N | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 6.10.140.160 | Special | Helix non-globular | Helix Hairpins | CATH (4.3.0) | |
A | 3.30.70.1660 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | CATH (4.3.0) | |
A | 3.30.160.20 | Alpha Beta | 2-Layer Sandwich | Double Stranded RNA Binding Domain | CATH (4.3.0) | |
B | 6.10.140.160 | Special | Helix non-globular | Helix Hairpins | CATH (4.3.0) | |
B | 3.30.70.1660 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | CATH (4.3.0) | |
B | 3.30.160.20 | Alpha Beta | 2-Layer Sandwich | Double Stranded RNA Binding Domain | CATH (4.3.0) | |
C | 6.10.140.160 | Special | Helix non-globular | Helix Hairpins | CATH (4.3.0) | |
C | 3.30.70.1660 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | CATH (4.3.0) | |
C | 3.30.160.20 | Alpha Beta | 2-Layer Sandwich | Double Stranded RNA Binding Domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF03462 | PCRF domain (PCRF) | PCRF domain | This domain is found in peptide chain release factors. | Domain | |
PF00472 | RF-1 domain (RF-1) | RF-1 domain | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Peptide chain release factor 1 |
| - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR050057 | Prokaryotic/Mitochondrial Release Factor | Family | |
IPR004373 | Peptide chain release factor 1 | Family | |
IPR000352 | Peptide chain release factor class I | Domain | |
IPR045853 | Peptide chain release factor class I superfamily | Homologous Superfamily | |
IPR005139 | Peptide chain release factor | Domain |