1RPT

CRYSTAL STRUCTURES OF RAT ACID PHOSPHATASE COMPLEXED WITH THE TRANSITIONS STATE ANALOGS VANADATE AND MOLYBDATE: IMPLICATIONS FOR THE REACTION MECHANISM

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Structure Motif: Primary M-CSA Annotation

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1rpta_	Alpha and beta proteins (a/b)	Phosphoglycerate mutase-like	Phosphoglycerate mutase-like	Histidine acid phosphatase	Prostatic acid phosphatase	Norway rat (Rattus norvegicus ) [TaxId: 10116 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Histidine phosphatase-like	8032234	3000781	SCOP2B (2021-05-27)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF00328	e1rptA1	A: a/b three-layered sandwiches	X: Phosphoglycerate mutase-like (From Topology)	H: Phosphoglycerate mutase-like (From Topology)	T: Phosphoglycerate mutase-like	F: PF00328	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.40.50.1240	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Phosphoglycerate mutase-like	CATH (4.2.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00328	Histidine phosphatase superfamily (branch 2) (His_Phos_2)	Histidine phosphatase superfamily (branch 2)	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	PROSTATIC ACID PHOSPHATASE	choline binding cation binding ion binding binding small molecule binding phosphoric ester hydrolase activity hydrolase activity, acting on ester bonds phosphatase activity hydrolase activity catalytic activity phosphoprotein phosphatase activity catalytic activity, acting on a protein protein tyrosine phosphatase activity nucleotidase activity choline binding cation binding ion binding binding small molecule binding phosphoric ester hydrolase activity hydrolase activity, acting on ester bonds phosphatase activity hydrolase activity catalytic activity phosphoprotein phosphatase activity catalytic activity, acting on a protein protein tyrosine phosphatase activity nucleotidase activity XMP 5'-nucleosidase activity 5'-nucleotidase activity identical protein binding protein binding protein homodimerization activity protein dimerization activity acid phosphatase activity thiamine phosphate phosphatase activity lysophosphatidic acid phosphatase activity molecular adaptor activity	pyrimidine-containing compound metabolic process organonitrogen compound metabolic process cellular metabolic process organic hydroxy compound metabolic process thiamine-containing compound metabolic process alcohol metabolic process thiamine metabolic process vitamin metabolic process small molecule metabolic process metabolic process sulfur compound metabolic process cellular process water-soluble vitamin metabolic process primary alcohol metabolic process pyrimidine-containing compound metabolic process organonitrogen compound metabolic process cellular metabolic process organic hydroxy compound metabolic process thiamine-containing compound metabolic process alcohol metabolic process thiamine metabolic process vitamin metabolic process small molecule metabolic process metabolic process sulfur compound metabolic process cellular process water-soluble vitamin metabolic process primary alcohol metabolic process nucleobase-containing compound metabolic process purine nucleobase metabolic process nucleobase-containing small molecule metabolic process nucleobase metabolic process primary metabolic process purine-containing compound metabolic process multicellular organismal process system process regulation of biological process nervous system process regulation of system process biological regulation sensory perception of pain regulation of nervous system process sensory perception regulation of sensory perception regulation of multicellular organismal process regulation of sensory perception of pain glycosyl compound metabolic process carbohydrate derivative metabolic process nucleoside metabolic process adenosine metabolic process purine nucleoside metabolic process ribonucleoside metabolic process purine ribonucleoside metabolic process lipid metabolic process cellular component organization lysosome organization organelle organization vacuole organization lytic vacuole organization cellular component organization or biogenesis nucleoside phosphate metabolic process nucleotide metabolic process organophosphate metabolic process phosphate-containing compound metabolic process phosphorus metabolic process cellular response to stimulus positive regulation of cell communication regulation of cellular process positive regulation of signal transduction response to stimulus signaling positive regulation of biological process positive regulation of adenosine receptor signaling pathway regulation of signal transduction cell communication positive regulation of response to stimulus signal transduction regulation of G protein-coupled receptor signaling pathway positive regulation of cellular process regulation of signaling purinergic nucleotide receptor signaling pathway cell surface receptor signaling pathway G protein-coupled purinergic receptor signaling pathway positive regulation of G protein-coupled receptor signaling pathway regulation of adenosine receptor signaling pathway regulation of response to stimulus regulation of cell communication G protein-coupled receptor signaling pathway G protein-coupled adenosine receptor signaling pathway positive regulation of signaling dephosphorylation	membrane cellular anatomical entity apical part of cell cell periphery plasma membrane membrane-bounded organelle intracellular anatomical structure intracellular vesicle intracellular membrane-bounded organelle endomembrane system intracellular organelle cytoplasmic vesicle organelle secretory granule membrane cellular anatomical entity apical part of cell cell periphery plasma membrane membrane-bounded organelle intracellular anatomical structure intracellular vesicle intracellular membrane-bounded organelle endomembrane system intracellular organelle cytoplasmic vesicle organelle secretory granule secretory vesicle cytoplasm vesicle vesicle membrane organelle membrane endosome late endosome multivesicular body lytic vacuole vacuole lysosome vacuolar membrane lytic vacuole membrane bounding membrane of organelle lysosomal membrane Golgi apparatus subcompartment Golgi apparatus organelle subcompartment Golgi cisterna Golgi stack extracellular region extracellular space cell projection actin-based cell projection filopodium plasma membrane bounded cell projection

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR000560	Histidine phosphatase superfamily, clade-2	Family
A	IPR029033	Histidine phosphatase superfamily	Homologous Superfamily
A	IPR033379	Histidine acid phosphatase active site	Active Site

Structure Motif Annotation: Mechanism and Catalytic Site Atlas M-CSA Database Homepage

Chains	Enzyme Name	Description	Catalytic Residues
A	high molecular weight acid phosphatase M-CSA #454	High molecular weight acid phosphatases (HAPs) form a subclass of phosphomonoesterases which are found in locations as diverse as wheat germ, mammalian prostate tissue, and as extracellular or periplasmic enzymes in fungi and bacteria. These proteins act as non-specific tyrosine phosphatase that dephosphorylate a diverse number of substrates under acidic conditions (pH 4-6) including alkyl, aryl, and acyl orthophosphate monoesters and phosphorylated proteins. They have also been shown to have lipid phosphatase activity. In mammals they have been shown to inactivate lysophosphatidic acid in seminal plasma. In the fungus Aspergillus ficuum the homologous phytase is essential in metabolising phytate, the major phosphorous storage form in plant seeds. The HAPs have a distinct mechanism from other acid phosphatases; they retain the configuration of the substrate phosphorous atom while the purple acid phosphatases reverse it, and use a phospho-histidine intermediate. Evidently nature has 'discovered' multiple ways of catalysing this important reaction.	Defined by 6 residues: ARG:A-11HIS:A-12ARG:A-15ARG:A-79HIS:A-257ASP:A-258 \| Explore in 3D: M-CSA Motif Definition Search M-CSA Motif EC: 3.1.3.2 (PDB Primary Data) Search M-CSA Motif + EC 3.1.3.2

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.