1RF8
Solution structure of the yeast translation initiation factor eIF4E in complex with m7GDP and eIF4GI residues 393 to 490
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1rf8a_ | Alpha and beta proteins (a+b) | eIF4e-like | eIF4e-like | Translation initiation factor eIF4e | Translation initiation factor eIF4e | baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ], | SCOPe (2.08) |
B | d1rf8b1 | All alpha proteins | Eukaryotic initiation factor 4f subunit eIF4g, eIF4e-binding domain | Eukaryotic initiation factor 4f subunit eIF4g, eIF4e-binding domain | Eukaryotic initiation factor 4f subunit eIF4g, eIF4e-binding domain | Eukaryotic initiation factor 4f subunit eIF4g, eIF4e-binding domain | baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ], | SCOPe (2.08) |
B | d1rf8b2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | eIF4e-like | 8035316 | 3001871 | SCOP2B (2022-06-29) |
B | SCOP2 Family | Eukaryotic initiation factor 4f subunit eIF4g, eIF4e-binding domain | 8028165 | 4000786 | SCOP2 (2022-06-29) |
B | SCOP2 Superfamily | Eukaryotic initiation factor 4f subunit eIF4g, eIF4e-binding domain | 8040544 | 3001364 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | IF4E | e1rf8A1 | A: a+b two layers | X: Translation initiation factor eIF4e and phosphothreonine lyase (From Topology) | H: Translation initiation factor eIF4e and phosphothreonine lyase (From Topology) | T: Translation initiation factor eIF4e and phosphothreonine lyase | F: IF4E | ECOD (1.6) |
B | eIF_4G1 | e1rf8B1 | A: alpha arrays | X: Eukaryotic initiation factor 4f subunit eIF4g, eIF4e-binding domain (From Topology) | H: Eukaryotic initiation factor 4f subunit eIF4g, eIF4e-binding domain (From Topology) | T: Eukaryotic initiation factor 4f subunit eIF4g, eIF4e-binding domain | F: eIF_4G1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.760.10 | Alpha Beta | 2-Layer Sandwich | RNA Cap, Translation Initiation Factor Eif4e | RNA Cap, Translation Initiation Factor Eif4e | CATH (4.3.0) |
B | 1.20.970.30 | Mainly Alpha | Up-down Bundle | Transferase, Pyrimidine Nucleoside Phosphorylase | Chain A, domain 3 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01652 | Eukaryotic initiation factor 4E (IF4E) | Eukaryotic initiation factor 4E | - | Domain | |
PF12152 | Eukaryotic translation initiation factor 4G1 (eIF_4G1) | Eukaryotic translation initiation factor 4G1 | This domain is found in eukaryotes, and is about 80 amino acids in length. It is found in association with Pfam:PF02854. This domain is part of the protein eIF_4G. It binds to eIF_4E by wrapping around its N terminal to form the eIF_4F complex. This ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR019770 | Eukaryotic translation initiation factor 4E (eIF-4E), conserved site | Conserved Site | |
IPR023398 | Translation Initiation factor eIF- 4e-like | Homologous Superfamily | |
IPR001040 | Translation Initiation factor eIF- 4e | Family | |
IPR036211 | eIF4G, eIF4e-binding domain superfamily | Homologous Superfamily | |
IPR016024 | Armadillo-type fold | Homologous Superfamily | |
IPR022745 | Eukaryotic translation initiation factor 4G1, eIF4E-binding domain | Domain | |
IPR003890 | MIF4G-like, type 3 | Domain | |
IPR045208 | IF4G | Unknown |