Crystal structure of beta-D-xylosidase from Thermoanaerobacterium saccharolyticum, a family 39 glycoside hydrolase
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B | d1px8b1 | All beta proteins | Glycosyl hydrolase domain | Glycosyl hydrolase domain | Composite domain of glycosyl hydrolase families 5, 30, 39 and 51 | Beta-D-xylosidase | (Thermoanaerobacterium saccharolyticum ) [TaxId: 28896 ], | SCOPe (2.08) |
| B | d1px8b2 | Alpha and beta proteins (a/b) | TIM beta/alpha-barrel | (Trans)glycosidases | beta-glycanases | Beta-D-xylosidase, catalytic domain | (Thermoanaerobacterium saccharolyticum ) [TaxId: 28896 ], | SCOPe (2.08) |
| A | d1px8a1 | All beta proteins | Glycosyl hydrolase domain | Glycosyl hydrolase domain | Composite domain of glycosyl hydrolase families 5, 30, 39 and 51 | Beta-D-xylosidase | (Thermoanaerobacterium saccharolyticum ) [TaxId: 28896 ], | SCOPe (2.08) |
| A | d1px8a2 | Alpha and beta proteins (a/b) | TIM beta/alpha-barrel | (Trans)glycosidases | beta-glycanases | Beta-D-xylosidase, catalytic domain | (Thermoanaerobacterium saccharolyticum ) [TaxId: 28896 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| B | SCOP2B Superfamily | Glycosyl hydrolase domain-like | 8041800 | 3001528 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | Glycosyl hydrolase domain-like | 8041800 | 3001528 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | (Trans)glycosidases | 8041803 | 3000313 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | Glycosyl hydrolase domain-like | 8041800 | 3001528 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | Glycosyl hydrolase domain-like | 8041800 | 3001528 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | (Trans)glycosidases | 8041803 | 3000313 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B | Crystall | e1px8B1 | A: a/b three-layered sandwiches | X: Phage tail fiber protein trimerization domain | H: beta-Prism I | T: beta-Prism I | F: Crystall | ECOD (v294.1) |
| B | DUF711 | e1px8B2 | A: a/b three-layered sandwiches | X: HTH | H: HTH | T: winged helix domain | F: DUF711 | ECOD (v294.1) |
| A | Crystall | e1px8A1 | A: a/b three-layered sandwiches | X: Phage tail fiber protein trimerization domain | H: beta-Prism I | T: beta-Prism I | F: Crystall | ECOD (v294.1) |
| A | DUF711 | e1px8A2 | A: a/b three-layered sandwiches | X: HTH | H: HTH | T: winged helix domain | F: DUF711 | ECOD (v294.1) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| B | 2.60.40.1500 | Mainly Beta | Sandwich | Immunoglobulin-like | Glycosyl hydrolase domain | CATH (4.3.0) |
| B | 3.20.20.80 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Glycosidases | CATH (4.3.0) |
| A | 2.60.40.1500 | Mainly Beta | Sandwich | Immunoglobulin-like | Glycosyl hydrolase domain | CATH (4.3.0) |
| A | 3.20.20.80 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Glycosidases | CATH (4.3.0) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR049166 | Glycosyl hydrolases family 39, N-terminal catalytic domain | Domain | |
| IPR000514 | Glycoside hydrolase, family 39 | Family | |
| IPR051923 | Glycosyl Hydrolase Family 39 | Family | |
| IPR017853 | Glycoside hydrolase superfamily | Homologous Superfamily | |
| IPR049165 | Glycosyl hydrolases family 39, active site | Active Site |














