1PFK
CRYSTAL STRUCTURE OF THE COMPLEX OF PHOSPHOFRUCTOKINASE FROM ESCHERICHIA COLI WITH ITS REACTION PRODUCTS
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1pfka_ | Alpha and beta proteins (a/b) | Phosphofructokinase | Phosphofructokinase | Phosphofructokinase | ATP-dependent phosphofructokinase | (Escherichia coli ) [TaxId: 562 ], | SCOPe (2.08) |
B | d1pfkb_ | Alpha and beta proteins (a/b) | Phosphofructokinase | Phosphofructokinase | Phosphofructokinase | ATP-dependent phosphofructokinase | (Escherichia coli ) [TaxId: 562 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Phosphofructokinase | 8020844 | 4000837 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Phosphofructokinase | 8033224 | 3001648 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | Phosphofructokinase | 8033224 | 3001648 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF00365 | e1pfkA2 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Phosphofructokinase N-terminal domain | F: PF00365 | ECOD (1.6) |
A | PF00365 | e1pfkA3 | A: a/b three-layered sandwiches | X: Phosphofructokinase C-terminal domain (From Topology) | H: Phosphofructokinase C-terminal domain (From Topology) | T: Phosphofructokinase C-terminal domain | F: PF00365 | ECOD (1.6) |
B | PF00365 | e1pfkB1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Phosphofructokinase N-terminal domain | F: PF00365 | ECOD (1.6) |
B | PF00365 | e1pfkB2 | A: a/b three-layered sandwiches | X: Phosphofructokinase C-terminal domain (From Topology) | H: Phosphofructokinase C-terminal domain (From Topology) | T: Phosphofructokinase C-terminal domain | F: PF00365 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.50.450 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | CATH (4.3.0) | |
A | 3.40.50.460 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Phosphofructokinase domain | CATH (4.3.0) |
B | 3.40.50.450 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | CATH (4.3.0) | |
B | 3.40.50.460 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Phosphofructokinase domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00365 | Phosphofructokinase (PFK) | Phosphofructokinase | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR012828 | ATP-dependent 6-phosphofructokinase, prokaryotic | Family | |
IPR035966 | Phosphofructokinase superfamily | Homologous Superfamily | |
IPR000023 | Phosphofructokinase domain | Domain | |
IPR012003 | ATP-dependent 6-phosphofructokinase, prokaryotic-type | Family | |
IPR022953 | ATP-dependent 6-phosphofructokinase | Family | |
IPR015912 | Phosphofructokinase, conserved site | Conserved Site |
Structure Motif Annotation: Mechanism and Catalytic Site Atlas M-CSA Database Homepage
Chains | Enzyme Name | Description | Catalytic Residues |
---|---|---|---|
Phosphofructokinase I M-CSA #365 | Phosphofructokinase (PFK) is a key enzyme in glycolysis. It transfers a phosphate group to fructose and in doing so controls entry into the pathway. PFK is highly regulated and is cooperative for fructose and shows allosteric inhibition by phosphoenolpyruvate and activation by ADP. The enzyme changes from the R state to the T state by a rotation around the 'p' axis of the molecule, resulting in a change in the subunit-subunit interactions that are communicated to the active site. The ATP binding site remains fixed during the transition from R to T state except for the residue arg 72 that is important for bridging the substrate phosphates during catalysis. In the T state this Arg residue forms a salt bridge with glu241. The T state is also characterised by a large change in the substrate binding site, the movement of the '6-F' loop leads to the collapse of this binding site. | Defined by 7 residues: GLY:A-12 [auth A-11]ARG:A-73 [auth A-72]ASP:A-104 [auth A-103]THR:A-126 [auth A-125]ASP:A-128 [auth A-127]ASP:A-130 [auth A-129]ARG:A-172 [auth A-171] | EC: 2.7.1.11 (PDB Primary Data) |