1OYP
Crystal Structure of the phosphorolytic exoribonuclease RNase PH from Bacillus subtilis
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Ribonuclease PH domain 2-like | 8037934 | 3000346 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8037932 | 3000100 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Ribonuclease PH domain 2-like | 8037934 | 3000346 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8037932 | 3000100 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Ribonuclease PH domain 2-like | 8037934 | 3000346 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8037932 | 3000100 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Ribonuclease PH domain 2-like | 8037934 | 3000346 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8037932 | 3000100 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8037932 | 3000100 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Ribonuclease PH domain 2-like | 8037934 | 3000346 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Ribonuclease PH domain 2-like | 8037934 | 3000346 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8037932 | 3000100 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | RNase_PH | e1oypA2 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: RNase_PH | ECOD (1.6) |
A | RNase_PH_C_4 | e1oypA1 | A: a+b two layers | X: Ribonuclease PH domain 2-like | H: Ribonuclease PH domain 2 (From Topology) | T: Ribonuclease PH domain 2 | F: RNase_PH_C_4 | ECOD (1.6) |
B | RNase_PH | e1oypB2 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: RNase_PH | ECOD (1.6) |
B | RNase_PH_C_4 | e1oypB3 | A: a+b two layers | X: Ribonuclease PH domain 2-like | H: Ribonuclease PH domain 2 (From Topology) | T: Ribonuclease PH domain 2 | F: RNase_PH_C_4 | ECOD (1.6) |
C | RNase_PH | e1oypC2 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: RNase_PH | ECOD (1.6) |
C | RNase_PH_C_4 | e1oypC1 | A: a+b two layers | X: Ribonuclease PH domain 2-like | H: Ribonuclease PH domain 2 (From Topology) | T: Ribonuclease PH domain 2 | F: RNase_PH_C_4 | ECOD (1.6) |
D | RNase_PH | e1oypD2 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: RNase_PH | ECOD (1.6) |
D | RNase_PH_C_4 | e1oypD3 | A: a+b two layers | X: Ribonuclease PH domain 2-like | H: Ribonuclease PH domain 2 (From Topology) | T: Ribonuclease PH domain 2 | F: RNase_PH_C_4 | ECOD (1.6) |
E | RNase_PH | e1oypE2 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: RNase_PH | ECOD (1.6) |
E | RNase_PH_C_4 | e1oypE3 | A: a+b two layers | X: Ribonuclease PH domain 2-like | H: Ribonuclease PH domain 2 (From Topology) | T: Ribonuclease PH domain 2 | F: RNase_PH_C_4 | ECOD (1.6) |
F | RNase_PH | e1oypF2 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: RNase_PH | ECOD (1.6) |
F | RNase_PH_C_4 | e1oypF1 | A: a+b two layers | X: Ribonuclease PH domain 2-like | H: Ribonuclease PH domain 2 (From Topology) | T: Ribonuclease PH domain 2 | F: RNase_PH_C_4 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.230.70 | Alpha Beta | 2-Layer Sandwich | Ribosomal Protein S5 | domain 2 | CATH (4.3.0) |
B | 3.30.230.70 | Alpha Beta | 2-Layer Sandwich | Ribosomal Protein S5 | domain 2 | CATH (4.3.0) |
C | 3.30.230.70 | Alpha Beta | 2-Layer Sandwich | Ribosomal Protein S5 | domain 2 | CATH (4.3.0) |
D | 3.30.230.70 | Alpha Beta | 2-Layer Sandwich | Ribosomal Protein S5 | domain 2 | CATH (4.3.0) |
E | 3.30.230.70 | Alpha Beta | 2-Layer Sandwich | Ribosomal Protein S5 | domain 2 | CATH (4.3.0) |
F | 3.30.230.70 | Alpha Beta | 2-Layer Sandwich | Ribosomal Protein S5 | domain 2 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF03725 | 3' exoribonuclease family, domain 2 (RNase_PH_C) | 3' exoribonuclease family, domain 2 | This family includes 3'-5' exoribonucleases. Ribonuclease PH contains a single copy of this domain, and removes nucleotide residues following the -CCA terminus of tRNA. Polyribonucleotide nucleotidyltransferase (PNPase) contains two tandem copies of ... | Domain | |
PF01138 | 3' exoribonuclease family, domain 1 (RNase_PH) | 3' exoribonuclease family, domain 1 | This family includes 3'-5' exoribonucleases. Ribonuclease PH contains a single copy of this domain, and removes nucleotide residues following the -CCA terminus of tRNA. Polyribonucleotide nucleotidyltransferase (PNPase) contains two tandem copies of ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR050080 | Ribonuclease PH | Family | |
IPR018336 | Ribonuclease PH, conserved site | Conserved Site | |
IPR027408 | PNPase/RNase PH domain superfamily | Homologous Superfamily | |
IPR001247 | Exoribonuclease, phosphorolytic domain 1 | Domain | |
IPR036345 | Exoribonuclease, PH domain 2 superfamily | Homologous Superfamily | |
IPR020568 | Ribosomal protein uS5 domain 2-type superfamily | Homologous Superfamily | |
IPR002381 | Ribonuclease PH, bacterial-type | Family | |
IPR015847 | Exoribonuclease, phosphorolytic domain 2 | Domain |