1OXJ
Crystal structure of the Smaug RNA binding domain
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1oxja1 | All alpha proteins | SAM domain-like | SAM/Pointed domain | SAM (sterile alpha motif) domain | RNA-binding protein Smaug | fruit fly (Drosophila melanogaster ) [TaxId: 7227 ], | SCOPe (2.08) |
A | d1oxja2 | All alpha proteins | alpha-alpha superhelix | ARM repeat | PHAT domain | RNA-binding protein Smaug | fruit fly (Drosophila melanogaster ) [TaxId: 7227 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | SAM (sterile alpha motif) domain | 8022050 | 4001022 | SCOP2 (2022-06-29) |
A | SCOP2 Family | PHAT domain | 8022052 | 4003821 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | SAM/Pointed domain | 8034430 | 3000479 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | ARM repeat-like | 8034432 | 3000116 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | SAM_1 | e1oxjA1 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: SAM_1 | ECOD (1.6) |
A | PHAT | e1oxjA2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PHAT | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.10.150.50 | Mainly Alpha | Orthogonal Bundle | DNA polymerase | domain 1 | CATH (4.3.0) |
A | 1.25.40.170 | Mainly Alpha | Alpha Horseshoe | Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat | Smaug, PHAT domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF09246 | PHAT (PHAT) | PHAT | - | Repeat | |
PF00536 | SAM domain (Sterile alpha motif) (SAM_1) | SAM domain (Sterile alpha motif) | It has been suggested that SAM is an evolutionarily conserved protein binding domain that is involved in the regulation of numerous developmental processes in diverse eukaryotes. The SAM domain can potentially function as a protein interaction module ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR013761 | Sterile alpha motif/pointed domain superfamily | Homologous Superfamily | |
IPR016024 | Armadillo-type fold | Homologous Superfamily | |
IPR037634 | Protein Smaug, SAM domain | Domain | |
IPR037093 | Smaug, PHAT domain superfamily | Homologous Superfamily | |
IPR015327 | Smaug, PHAT analogous topology | Domain | |
IPR050897 | SMAUG/VTS1 RNA-binding | Family | |
IPR001660 | Sterile alpha motif domain | Domain |