Annotations: 1OQE

Crystal structure of sTALL-1 with BAFF-R

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
R	d1oqer_	Small proteins	TNF receptor-like	TNF receptor-like	BAFF receptor-like	Tumor necrosis factor receptor superfamily member 13c, BAFF-R, Br3	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
Q	d1oqeq_	Small proteins	TNF receptor-like	TNF receptor-like	BAFF receptor-like	Tumor necrosis factor receptor superfamily member 13c, BAFF-R, Br3	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
P	d1oqep_	Small proteins	TNF receptor-like	TNF receptor-like	BAFF receptor-like	Tumor necrosis factor receptor superfamily member 13c, BAFF-R, Br3	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
O	d1oqeo_	Small proteins	TNF receptor-like	TNF receptor-like	BAFF receptor-like	Tumor necrosis factor receptor superfamily member 13c, BAFF-R, Br3	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
N	d1oqen_	Small proteins	TNF receptor-like	TNF receptor-like	BAFF receptor-like	Tumor necrosis factor receptor superfamily member 13c, BAFF-R, Br3	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
M	d1oqem_	Small proteins	TNF receptor-like	TNF receptor-like	BAFF receptor-like	Tumor necrosis factor receptor superfamily member 13c, BAFF-R, Br3	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
L	d1oqel_	Small proteins	TNF receptor-like	TNF receptor-like	BAFF receptor-like	Tumor necrosis factor receptor superfamily member 13c, BAFF-R, Br3	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
K	d1oqek_	Small proteins	TNF receptor-like	TNF receptor-like	BAFF receptor-like	Tumor necrosis factor receptor superfamily member 13c, BAFF-R, Br3	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
J	d1oqej_	All beta proteins	TNF-like	TNF-like	TNF-like	Soluble part of TALL-1, sTALL-1 (BAFF)	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
I	d1oqei_	All beta proteins	TNF-like	TNF-like	TNF-like	Soluble part of TALL-1, sTALL-1 (BAFF)	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
H	d1oqeh_	All beta proteins	TNF-like	TNF-like	TNF-like	Soluble part of TALL-1, sTALL-1 (BAFF)	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
G	d1oqeg_	All beta proteins	TNF-like	TNF-like	TNF-like	Soluble part of TALL-1, sTALL-1 (BAFF)	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
F	d1oqef_	All beta proteins	TNF-like	TNF-like	TNF-like	Soluble part of TALL-1, sTALL-1 (BAFF)	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
E	d1oqee_	All beta proteins	TNF-like	TNF-like	TNF-like	Soluble part of TALL-1, sTALL-1 (BAFF)	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
D	d1oqed_	All beta proteins	TNF-like	TNF-like	TNF-like	Soluble part of TALL-1, sTALL-1 (BAFF)	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
C	d1oqec_	All beta proteins	TNF-like	TNF-like	TNF-like	Soluble part of TALL-1, sTALL-1 (BAFF)	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d1oqeb_	All beta proteins	TNF-like	TNF-like	TNF-like	Soluble part of TALL-1, sTALL-1 (BAFF)	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d1oqea_	All beta proteins	TNF-like	TNF-like	TNF-like	Soluble part of TALL-1, sTALL-1 (BAFF)	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
R	SCOP2B Superfamily	TNF receptor-like	8034246	3000971	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	TNF receptor-like	8034246	3000971	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	TNF receptor-like	8034246	3000971	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	TNF receptor-like	8034246	3000971	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	TNF receptor-like	8034246	3000971	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	TNF receptor-like	8034246	3000971	SCOP2B (2022-06-29)
K	SCOP2 Family	BAFF receptor-like	8021866	4003853	SCOP2 (2022-06-29)
K	SCOP2 Superfamily	TNF receptor-like	8034246	3000971	SCOP2 (2022-06-29)
J	SCOP2B Superfamily	TNF-like	8040716	3000061	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	TNF-like	8040716	3000061	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	TNF-like	8040716	3000061	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	TNF-like	8040716	3000061	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	TNF-like	8040716	3000061	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	TNF-like	8040716	3000061	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	TNF-like	8040716	3000061	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	TNF-like	8040716	3000061	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	TNF-like	8040716	3000061	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	TNF-like	8040716	3000061	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
R		e1oqeR1	A: alpha arrays	X: C-terminal subdomain in Lon-related proteases catalytic domains	H: C-terminal subdomain in Lon-related proteases catalytic domains	T: C-terminal subdomain in Lon-related proteases catalytic domains	F:	ECOD (v295.2)
Q		e1oqeQ1	A: alpha arrays	X: C-terminal subdomain in Lon-related proteases catalytic domains	H: C-terminal subdomain in Lon-related proteases catalytic domains	T: C-terminal subdomain in Lon-related proteases catalytic domains	F:	ECOD (v295.2)
P		e1oqeP1	A: alpha arrays	X: C-terminal subdomain in Lon-related proteases catalytic domains	H: C-terminal subdomain in Lon-related proteases catalytic domains	T: C-terminal subdomain in Lon-related proteases catalytic domains	F:	ECOD (v295.2)
O		e1oqeO1	A: alpha arrays	X: C-terminal subdomain in Lon-related proteases catalytic domains	H: C-terminal subdomain in Lon-related proteases catalytic domains	T: C-terminal subdomain in Lon-related proteases catalytic domains	F:	ECOD (v295.2)
N		e1oqeN1	A: alpha arrays	X: C-terminal subdomain in Lon-related proteases catalytic domains	H: C-terminal subdomain in Lon-related proteases catalytic domains	T: C-terminal subdomain in Lon-related proteases catalytic domains	F:	ECOD (v295.2)
M		e1oqeM1	A: alpha arrays	X: C-terminal subdomain in Lon-related proteases catalytic domains	H: C-terminal subdomain in Lon-related proteases catalytic domains	T: C-terminal subdomain in Lon-related proteases catalytic domains	F:	ECOD (v295.2)
L		e1oqeL1	A: alpha arrays	X: C-terminal subdomain in Lon-related proteases catalytic domains	H: C-terminal subdomain in Lon-related proteases catalytic domains	T: C-terminal subdomain in Lon-related proteases catalytic domains	F:	ECOD (v295.2)
K	BaffR-Tall_bind	e1oqeK1	A: few secondary structure elements	X: EGF-like	H: EGF-related	T: TNF receptor-like	F: BaffR-Tall_bind	ECOD (v295.2)
J	Copper-bind	e1oqeJ1	A: alpha arrays	X: Phage tail fiber protein trimerization domain	H: Phage tail fiber protein trimerization domain	T: Phage tail fiber protein trimerization domain	F: Copper-bind	ECOD (v295.2)
I	Copper-bind	e1oqeI1	A: alpha arrays	X: Phage tail fiber protein trimerization domain	H: Phage tail fiber protein trimerization domain	T: Phage tail fiber protein trimerization domain	F: Copper-bind	ECOD (v295.2)
H	Copper-bind	e1oqeH1	A: alpha arrays	X: Phage tail fiber protein trimerization domain	H: Phage tail fiber protein trimerization domain	T: Phage tail fiber protein trimerization domain	F: Copper-bind	ECOD (v295.2)
G	Copper-bind	e1oqeG1	A: alpha arrays	X: Phage tail fiber protein trimerization domain	H: Phage tail fiber protein trimerization domain	T: Phage tail fiber protein trimerization domain	F: Copper-bind	ECOD (v295.2)
F	Copper-bind	e1oqeF1	A: alpha arrays	X: Phage tail fiber protein trimerization domain	H: Phage tail fiber protein trimerization domain	T: Phage tail fiber protein trimerization domain	F: Copper-bind	ECOD (v295.2)
E	Copper-bind	e1oqeE1	A: alpha arrays	X: Phage tail fiber protein trimerization domain	H: Phage tail fiber protein trimerization domain	T: Phage tail fiber protein trimerization domain	F: Copper-bind	ECOD (v295.2)
D	Copper-bind	e1oqeD1	A: alpha arrays	X: Phage tail fiber protein trimerization domain	H: Phage tail fiber protein trimerization domain	T: Phage tail fiber protein trimerization domain	F: Copper-bind	ECOD (v295.2)
C	Copper-bind	e1oqeC1	A: alpha arrays	X: Phage tail fiber protein trimerization domain	H: Phage tail fiber protein trimerization domain	T: Phage tail fiber protein trimerization domain	F: Copper-bind	ECOD (v295.2)
B	Copper-bind	e1oqeB1	A: alpha arrays	X: Phage tail fiber protein trimerization domain	H: Phage tail fiber protein trimerization domain	T: Phage tail fiber protein trimerization domain	F: Copper-bind	ECOD (v295.2)
A	Copper-bind	e1oqeA1	A: alpha arrays	X: Phage tail fiber protein trimerization domain	H: Phage tail fiber protein trimerization domain	T: Phage tail fiber protein trimerization domain	F: Copper-bind	ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
J	2.60.120.40	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
I	2.60.120.40	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
H	2.60.120.40	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
G	2.60.120.40	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
F	2.60.120.40	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
E	2.60.120.40	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
D	2.60.120.40	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
C	2.60.120.40	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
B	2.60.120.40	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
A	2.60.120.40	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
K, L, M, N, O K, L, M, N, O, P, Q, R	PF09256	BAFF-R, TALL-1 binding (BaffR-Tall_bind)	BAFF-R, TALL-1 binding	Members of this family, which are predominantly found in the tumour necrosis factor receptor superfamily member 13c, BAFF-R, are required for binding to tumour necrosis factor ligand TALL-1 [1].	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	PF00229	TNF(Tumour Necrosis Factor) family (TNF)	TNF(Tumour Necrosis Factor) family		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
K, L, M, N, O K, L, M, N, O, P, Q, R	Tumor necrosis factor receptor superfamily member 13C	molecular transducer activity signaling receptor activity	multicellular organismal process regulation of cellular process regulation of leukocyte activation positive regulation of biological process regulation of cell activation positive regulation of leukocyte cell-cell adhesion lymphocyte activation leukocyte cell-cell adhesion leukocyte activation positive regulation of cell-cell adhesion positive regulation of lymphocyte activation positive regulation of cell activation cell adhesion cell-cell adhesion T cell activation multicellular organismal process regulation of cellular process regulation of leukocyte activation positive regulation of biological process regulation of cell activation positive regulation of leukocyte cell-cell adhesion lymphocyte activation leukocyte cell-cell adhesion leukocyte activation positive regulation of cell-cell adhesion positive regulation of lymphocyte activation positive regulation of cell activation cell adhesion cell-cell adhesion T cell activation positive regulation of leukocyte activation regulation of multicellular organismal process regulation of immune system process regulation of cell-cell adhesion positive regulation of immune system process positive regulation of cellular process regulation of biological process positive regulation of T cell activation positive regulation of cell adhesion regulation of cell adhesion cell activation biological regulation regulation of T cell activation immune system process lymphocyte costimulation regulation of leukocyte cell-cell adhesion positive regulation of multicellular organismal process cellular process T cell costimulation regulation of lymphocyte activation regulation of B cell activation B cell costimulation B cell activation positive regulation of B cell activation positive regulation of cell population proliferation positive regulation of B cell proliferation leukocyte proliferation regulation of B cell proliferation lymphocyte proliferation positive regulation of mononuclear cell proliferation regulation of lymphocyte proliferation regulation of leukocyte proliferation cell population proliferation positive regulation of lymphocyte proliferation B cell proliferation regulation of cell population proliferation mononuclear cell proliferation positive regulation of leukocyte proliferation regulation of mononuclear cell proliferation response to stimulus immune response adaptive immune response positive regulation of T cell proliferation T cell proliferation regulation of T cell proliferation cellular response to stimulus cell surface receptor signaling pathway signaling response to cytokine cytokine-mediated signaling pathway cell communication response to peptide cellular response to tumor necrosis factor response to chemical tumor necrosis factor-mediated signaling pathway cellular response to cytokine stimulus signal transduction response to tumor necrosis factor	cell periphery cellular anatomical structure plasma membrane membrane cell surface external side of plasma membrane side of membrane
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	Tumor necrosis factor ligand superfamily member 13B, soluble form	protein binding binding signaling receptor binding molecular function activator activity molecular function regulator activity cytokine activity signaling receptor regulator activity receptor ligand activity signaling receptor activator activity cytokine receptor binding tumor necrosis factor receptor superfamily binding tumor necrosis factor receptor binding	developmental process multicellular organismal process cellular developmental process hemopoiesis B cell activation cell activation cell development mononuclear cell differentiation lymphocyte differentiation lymphocyte activation leukocyte activation B cell differentiation cell differentiation immune system process anatomical structure development developmental process multicellular organismal process cellular developmental process hemopoiesis B cell activation cell activation cell development mononuclear cell differentiation lymphocyte differentiation lymphocyte activation leukocyte activation B cell differentiation cell differentiation immune system process anatomical structure development cellular process leukocyte differentiation response to stimulus immune response cellular response to stimulus regulation of biological process regulation of cellular process cell surface receptor signaling pathway signaling biological regulation response to cytokine cytokine-mediated signaling pathway cell communication response to peptide cellular response to tumor necrosis factor response to chemical tumor necrosis factor-mediated signaling pathway cellular response to cytokine stimulus signal transduction response to tumor necrosis factor multicellular organismal-level homeostasis leukocyte homeostasis homeostatic process homeostasis of number of cells lymphocyte homeostasis positive regulation of cell population proliferation positive regulation of B cell proliferation regulation of leukocyte activation positive regulation of biological process regulation of cell activation leukocyte proliferation positive regulation of lymphocyte activation positive regulation of cell activation regulation of B cell proliferation lymphocyte proliferation regulation of B cell activation positive regulation of leukocyte activation positive regulation of mononuclear cell proliferation regulation of immune system process regulation of multicellular organismal process positive regulation of immune system process positive regulation of cellular process regulation of lymphocyte proliferation regulation of leukocyte proliferation cell population proliferation positive regulation of lymphocyte proliferation B cell proliferation positive regulation of B cell activation regulation of cell population proliferation mononuclear cell proliferation positive regulation of leukocyte proliferation regulation of mononuclear cell proliferation positive regulation of multicellular organismal process regulation of lymphocyte activation	cellular anatomical structure membrane extracellular region intracellular anatomical structure perinuclear region of cytoplasm cytoplasm cell periphery plasma membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
K, L, M, N, O K, L, M, N, O, P, Q, R	IPR015336	Tumour necrosis factor receptor 13C, TALL-1 binding domain	Domain
K, L, M, N, O K, L, M, N, O, P, Q, R	IPR022338	Tumour necrosis factor receptor 13C	Family
K, L, M, N, O K, L, M, N, O, P, Q, R	IPR043521	Tumor necrosis factor receptor 13C/17	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR008983	Tumour necrosis factor-like domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR051748	Tumor Necrosis Factor Ligand Superfamily	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR006052	Tumour necrosis factor domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
K, L, M, N, O K, L, M, N, O, P, Q, R	: Q96RJ3	common variable immunodeficiency agammaglobulinemia Acquired Hypogammaglobulinemia immunodeficiency, common variable, 4 interstitial cystitis osteosarcoma tuberculosis medulloblastoma primitive neuroectodermal tumor ulcerative colitis B cell deficiency brain injury ductal breast carcinoma in situ nasopharyngeal carcinoma Sjogren syndrome
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	: Q9Y275	multiple sclerosis ovarian cancer sarcoidosis systemic lupus erythematosus arthritic joint disease breast cancer cystic fibrosis glioblastoma interstitial cystitis large cell medulloblastoma medulloblastoma non-small cell lung carcinoma pancreatic ductal adenocarcinoma Sjogren syndrome tuberculosis multiple sclerosis ovarian cancer sarcoidosis systemic lupus erythematosus arthritic joint disease breast cancer cystic fibrosis glioblastoma interstitial cystitis large cell medulloblastoma medulloblastoma non-small cell lung carcinoma pancreatic ductal adenocarcinoma Sjogren syndrome tuberculosis astrocytic tumor chronic obstructive pulmonary disease Duchenne muscular dystrophy head and neck cancer invasive ductal breast carcinoma lung carcinoma Mood Disorders osteosarcoma pilocytic astrocytoma subependymal giant cell astrocytoma ulcerative colitis autoimmune disease Crohn disease gastric carcinoma hematologic disease juvenile dermatomyositis malignant glioma

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.