1OAC
CRYSTAL STRUCTURE OF A QUINOENZYME: COPPER AMINE OXIDASE OF ESCHERICHIA COLI AT 2 ANGSTROEMS RESOLUTION
External Resource: Annotation
- Domain Annotation: SCOP/SCOPe Classification
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Protein Modification Annotation
- Structure Motif: Primary M-CSA Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Amine oxidase N-terminal region | 8034642 | 3000455 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Amine oxidase N-terminal region | 8034641 | 3000455 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | amine oxidase catalytic domain | 8041516 | 3001726 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Copper amine oxidase, domain N | 8035163 | 3001833 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Copper amine oxidase, domain N | 8035163 | 3001833 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Amine oxidase N-terminal region | 8034641 | 3000455 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | amine oxidase catalytic domain | 8041516 | 3001726 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Amine oxidase N-terminal region | 8034642 | 3000455 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Cu_amine_oxid | e1oacA1 | A: beta sandwiches | X: Glycosyl hydrolase domain-like | H: supersandwich (From Topology) | T: supersandwich | F: Cu_amine_oxid | ECOD (1.6) |
A | Cu_amine_oxidN1 | e1oacA4 | A: a+b two layers | X: Type III secretory system chaperone-like | H: N domain of copper amine oxidase (From Topology) | T: N domain of copper amine oxidase | F: Cu_amine_oxidN1 | ECOD (1.6) |
A | Cu_amine_oxidN2 | e1oacA2 | A: a+b two layers | X: Cystatin-like | H: Amine oxidase N-terminal region (From Topology) | T: Amine oxidase N-terminal region | F: Cu_amine_oxidN2 | ECOD (1.6) |
A | Cu_amine_oxidN3 | e1oacA3 | A: a+b two layers | X: Cystatin-like | H: Amine oxidase N-terminal region (From Topology) | T: Amine oxidase N-terminal region | F: Cu_amine_oxidN3 | ECOD (1.6) |
B | Cu_amine_oxid | e1oacB1 | A: beta sandwiches | X: Glycosyl hydrolase domain-like | H: supersandwich (From Topology) | T: supersandwich | F: Cu_amine_oxid | ECOD (1.6) |
B | Cu_amine_oxidN1 | e1oacB4 | A: a+b two layers | X: Type III secretory system chaperone-like | H: N domain of copper amine oxidase (From Topology) | T: N domain of copper amine oxidase | F: Cu_amine_oxidN1 | ECOD (1.6) |
B | Cu_amine_oxidN2 | e1oacB2 | A: a+b two layers | X: Cystatin-like | H: Amine oxidase N-terminal region (From Topology) | T: Amine oxidase N-terminal region | F: Cu_amine_oxidN2 | ECOD (1.6) |
B | Cu_amine_oxidN3 | e1oacB3 | A: a+b two layers | X: Cystatin-like | H: Amine oxidase N-terminal region (From Topology) | T: Amine oxidase N-terminal region | F: Cu_amine_oxidN3 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.457.10 | Alpha Beta | 2-Layer Sandwich | Copper Amine Oxidase | Chain A, domain 1 | CATH (4.3.0) |
A | 3.10.450.40 | Alpha Beta | Roll | Nuclear Transport Factor 2 | Chain: A, | CATH (4.3.0) |
A | 2.70.98.20 | Mainly Beta | Distorted Sandwich | Beta-galactosidase | Chain A, domain 5 | CATH (4.3.0) |
B | 3.30.457.10 | Alpha Beta | 2-Layer Sandwich | Copper Amine Oxidase | Chain A, domain 1 | CATH (4.3.0) |
B | 3.10.450.40 | Alpha Beta | Roll | Nuclear Transport Factor 2 | Chain: A, | CATH (4.3.0) |
B | 2.70.98.20 | Mainly Beta | Distorted Sandwich | Beta-galactosidase | Chain A, domain 5 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02728 | Copper amine oxidase, N3 domain (Cu_amine_oxidN3) | Copper amine oxidase, N3 domain | This domain is the second or third structural domain in copper amine oxidases, it is known as the N3 domain. Its function is uncertain. The catalytic domain can be found in Pfam:PF01179. Copper amine oxidases are a ubiquitous and novel group of quino ... | Domain | |
PF02727 | Copper amine oxidase, N2 domain (Cu_amine_oxidN2) | Copper amine oxidase, N2 domain | This domain is the first or second structural domain in copper amine oxidases, it is known as the N2 domain. Its function is uncertain. The catalytic domain can be found in Pfam:PF01179. Copper amine oxidases are a ubiquitous and novel group of quino ... | Domain | |
PF01179 | Copper amine oxidase, enzyme domain (Cu_amine_oxid) | Copper amine oxidase, enzyme domain | Copper amine oxidases are a ubiquitous and novel group of quinoenzymes that catalyse the oxidative deamination of primary amines to the corresponding aldehydes, with concomitant reduction of molecular oxygen to hydrogen peroxide. The enzymes are dime ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR000269 | Copper amine oxidase | Family | |
IPR036460 | Copper amine oxidase, catalytic domain superfamily | Homologous Superfamily | |
IPR012854 | Copper amine oxidase-like, N-terminal | Domain | |
IPR015798 | Copper amine oxidase, catalytic domain | Domain | |
IPR049947 | Copper amine oxidase, copper-binding site | Conserved Site | |
IPR016182 | Copper amine oxidase, N-terminal | Homologous Superfamily | |
IPR049948 | Copper amine oxidase, TPQ-binding site | Conserved Site | |
IPR036582 | Copper amine oxidase-like, N-terminal domain superfamily | Homologous Superfamily | |
IPR015802 | Copper amine oxidase, N3-terminal | Domain | |
IPR015800 | Copper amine oxidase, N2-terminal | Domain |
Structure Motif Annotation: Mechanism and Catalytic Site Atlas M-CSA Database Homepage
Chains | Enzyme Name | Description | Catalytic Residues |
---|---|---|---|
primary-amine oxidase M-CSA #864 | A group of enzymes that oxidise primary monoamines but have little or no activity towards diamines, such as histamine, or towards secondary and tertiary amines. They are copper quinoproteins (2,4,5-trihydroxyphenylalanine quinone) and are sensitive to inhibition by carbonyl-group reagents, such as semicarbazide. In some mammalian tissues the enzyme also functions as a vascular-adhesion protein (VAP-1). | Defined by 6 residues: TYR:A-369ASP:A-383TYR:A-466HIS:A-524HIS:A-526HIS:A-689 | EC: 1.4.3.6 (PDB Primary Data) |