1O0W
Crystal structure of Ribonuclease III (TM1102) from Thermotoga maritima at 2.0 A resolution
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | RNase III catalytic domain-like | 8031558 | 4002876 | SCOP2 (2022-06-29) |
A | SCOP2 Family | Double-stranded RNA-binding domain (dsRBD) | 8031559 | 4001172 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | RNase III domain-like | 8043936 | 3001839 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | dsRNA-binding domain-like | 8043937 | 3000985 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | dsRNA-binding domain-like | 8043937 | 3000985 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | RNase III domain-like | 8043936 | 3001839 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Ribonucleas_3_3 | e1o0wA1 | A: alpha arrays | X: RNase III catalytic domain-like (From Topology) | H: RNase III catalytic domain-like (From Topology) | T: RNase III catalytic domain-like | F: Ribonucleas_3_3 | ECOD (1.6) |
A | dsrm | e1o0wA2 | A: a+b two layers | X: dsRBD-like | H: dsRNA-binding domain-like (From Topology) | T: dsRNA-binding domain-like | F: dsrm | ECOD (1.6) |
B | Ribonucleas_3_3 | e1o0wB1 | A: alpha arrays | X: RNase III catalytic domain-like (From Topology) | H: RNase III catalytic domain-like (From Topology) | T: RNase III catalytic domain-like | F: Ribonucleas_3_3 | ECOD (1.6) |
B | dsrm | e1o0wB2 | A: a+b two layers | X: dsRBD-like | H: dsRNA-binding domain-like (From Topology) | T: dsRNA-binding domain-like | F: dsrm | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.10.1520.10 | Mainly Alpha | Orthogonal Bundle | Ribonuclease iii, N-terminal Endonuclease Domain | Chain A | CATH (4.3.0) |
A | 3.30.160.20 | Alpha Beta | 2-Layer Sandwich | Double Stranded RNA Binding Domain | CATH (4.3.0) | |
B | 1.10.1520.10 | Mainly Alpha | Orthogonal Bundle | Ribonuclease iii, N-terminal Endonuclease Domain | Chain A | CATH (4.3.0) |
B | 3.30.160.20 | Alpha Beta | 2-Layer Sandwich | Double Stranded RNA Binding Domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00035 | Double-stranded RNA binding motif (dsrm) | Double-stranded RNA binding motif | Sequences gathered for seed by HMM_iterative_training Putative motif shared by proteins that bind to dsRNA. At least some DSRM proteins seem to bind to specific RNA targets. Exemplified by Staufen, which is involved in localisation of at least five d ... | Domain | |
PF14622 | Ribonuclease-III-like (Ribonucleas_3_3) | Ribonuclease-III-like | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR011907 | Ribonuclease III | Family | |
IPR036389 | Ribonuclease III, endonuclease domain superfamily | Homologous Superfamily | |
IPR000999 | Ribonuclease III domain | Domain | |
IPR014720 | Double-stranded RNA-binding domain | Domain |