1NHK
CRYSTAL STRUCTURE OF MYXOCOCCUS XANTHUS NUCLEOSIDE DIPHOSPHATE KINASE AND ITS INTERACTION WITH A NUCLEOTIDE SUBSTRATE AT 2.0 ANGSTROMS RESOLUTION
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth R] | d1nhkr_ | Alpha and beta proteins (a+b) | Ferredoxin-like | Nucleoside diphosphate kinase, NDK | Nucleoside diphosphate kinase, NDK | Nucleoside diphosphate kinase, NDK | (Myxococcus xanthus ) [TaxId: 34 ], | SCOPe (2.08) |
B [auth L] | d1nhkl_ | Alpha and beta proteins (a+b) | Ferredoxin-like | Nucleoside diphosphate kinase, NDK | Nucleoside diphosphate kinase, NDK | Nucleoside diphosphate kinase, NDK | (Myxococcus xanthus ) [TaxId: 34 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth R] | SCOP2 Family | Nucleoside diphosphate kinase, NDK | 8022926 | 4001261 | SCOP2 (2022-06-29) |
A [auth R] | SCOP2 Superfamily | Nucleoside diphosphate kinase, NDK | 8035306 | 3001175 | SCOP2 (2022-06-29) |
B [auth L] | SCOP2B Superfamily | Nucleoside diphosphate kinase, NDK | 8035306 | 3001175 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth R] | NDK | e1nhkR1 | A: a+b two layers | X: Alpha-beta plaits | H: Nucleoside diphosphate kinases (From Topology) | T: Nucleoside diphosphate kinases | F: NDK | ECOD (1.6) |
B [auth L] | NDK | e1nhkL1 | A: a+b two layers | X: Alpha-beta plaits | H: Nucleoside diphosphate kinases (From Topology) | T: Nucleoside diphosphate kinases | F: NDK | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A [auth R] | 3.30.70.141 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | Nucleoside diphosphate kinase-like domain | CATH (4.3.0) |
B [auth L] | 3.30.70.141 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | Nucleoside diphosphate kinase-like domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth R], B [auth L] | PF00334 | Nucleoside diphosphate kinase (NDK) | Nucleoside diphosphate kinase | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth R], B [auth L] | IPR023005 | Nucleoside diphosphate kinase, active site | Active Site |
A [auth R], B [auth L] | IPR034907 | Nucleoside diphosphate kinase-like domain | Domain |
A [auth R], B [auth L] | IPR036850 | Nucleoside diphosphate kinase-like domain superfamily | Homologous Superfamily |
A [auth R], B [auth L] | IPR001564 | Nucleoside diphosphate kinase | Family |