1MWT
Structure of penicillin G acyl-Penicillin binding protein 2a from methicillin resistant Staphylococcus aureus strain 27r at 2.45 A resolution.
External Resource: Annotation
- Domain Annotation: SCOP/SCOPe Classification
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- AMR Gene: CARD Annotation
- AMR Gene Family: CARD Annotation
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | beta-lactamase/transpeptidase-like | 8043171 | 3001604 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | NTF2-like | 8043169 | 3000472 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Penicillin binding protein dimerisation domain | 8043170 | 3001420 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | NTF2-like | 8043169 | 3000472 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | beta-lactamase/transpeptidase-like | 8043171 | 3001604 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Penicillin binding protein dimerisation domain | 8043170 | 3001420 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF03717 | e1mwtA3 | A: beta complex topology | X: Penicillin binding protein dimerisation domain (From Topology) | H: Penicillin binding protein dimerisation domain (From Topology) | T: Penicillin binding protein dimerisation domain | F: PF03717 | ECOD (1.6) |
A | PF00905 | e1mwtA1 | A: alpha complex topology | X: alpha-helical domain in beta-lactamase/transpeptidase-like proteins (From Topology) | H: alpha-helical domain in beta-lactamase/transpeptidase-like proteins (From Topology) | T: alpha-helical domain in beta-lactamase/transpeptidase-like proteins | F: PF00905 | ECOD (1.6) |
A | PF05223 | e1mwtA5 | A: a+b two layers | X: Cystatin-like | H: NTF2-like (From Topology) | T: NTF2-like | F: PF05223 | ECOD (1.6) |
A | F_UNCLASSIFIED | e1mwtA4 | A: a+b two layers | X: ClpS-like | H: Penicillin binding protein ClpS-like domain (From Topology) | T: Penicillin binding protein ClpS-like domain | F: F_UNCLASSIFIED | ECOD (1.6) |
A | PF00905 | e1mwtA2 | A: a+b three layers | X: Profilin-like | H: a+b domain in beta-lactamase/transpeptidase-like proteins (From Topology) | T: a+b domain in beta-lactamase/transpeptidase-like proteins | F: PF00905 | ECOD (1.6) |
B | PF03717 | e1mwtB3 | A: beta complex topology | X: Penicillin binding protein dimerisation domain (From Topology) | H: Penicillin binding protein dimerisation domain (From Topology) | T: Penicillin binding protein dimerisation domain | F: PF03717 | ECOD (1.6) |
B | PF00905 | e1mwtB1 | A: alpha complex topology | X: alpha-helical domain in beta-lactamase/transpeptidase-like proteins (From Topology) | H: alpha-helical domain in beta-lactamase/transpeptidase-like proteins (From Topology) | T: alpha-helical domain in beta-lactamase/transpeptidase-like proteins | F: PF00905 | ECOD (1.6) |
B | PF05223 | e1mwtB5 | A: a+b two layers | X: Cystatin-like | H: NTF2-like (From Topology) | T: NTF2-like | F: PF05223 | ECOD (1.6) |
B | F_UNCLASSIFIED | e1mwtB4 | A: a+b two layers | X: ClpS-like | H: Penicillin binding protein ClpS-like domain (From Topology) | T: Penicillin binding protein ClpS-like domain | F: F_UNCLASSIFIED | ECOD (1.6) |
B | PF00905 | e1mwtB2 | A: a+b three layers | X: Profilin-like | H: a+b domain in beta-lactamase/transpeptidase-like proteins (From Topology) | T: a+b domain in beta-lactamase/transpeptidase-like proteins | F: PF00905 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.10.450.100 | Alpha Beta | Roll | Nuclear Transport Factor 2 | Chain: A, | CATH (4.3.0) |
A | 3.90.1310.10 | Alpha Beta | Alpha-Beta Complex | Penicillin-binding protein 2a (Domain 2) | Penicillin-binding protein 2a (Domain 2) | CATH (4.3.0) |
A | 3.30.1390.30 | Alpha Beta | 2-Layer Sandwich | Ribosomal Protein L30 | Chain: A, | CATH (4.3.0) |
A | 3.40.710.10 | Alpha Beta | 3-Layer(aba) Sandwich | Beta-lactamase | DD-peptidase/beta-lactamase superfamily | CATH (4.3.0) |
B | 3.10.450.100 | Alpha Beta | Roll | Nuclear Transport Factor 2 | Chain: A, | CATH (4.3.0) |
B | 3.90.1310.10 | Alpha Beta | Alpha-Beta Complex | Penicillin-binding protein 2a (Domain 2) | Penicillin-binding protein 2a (Domain 2) | CATH (4.3.0) |
B | 3.30.1390.30 | Alpha Beta | 2-Layer Sandwich | Ribosomal Protein L30 | Chain: A, | CATH (4.3.0) |
B | 3.40.710.10 | Alpha Beta | 3-Layer(aba) Sandwich | Beta-lactamase | DD-peptidase/beta-lactamase superfamily | CATH (4.3.0) |
AMR Gene: CARD Annotation CARD Database Homepage
Chains | Accession | Short Name | Description | Provenance Source (Version) |
---|---|---|---|---|
ARO:3000617 | mecA | A foreign PBP2a acquired by lateral gene transfer that is able to perform peptidoglycan synthesis in the presence of beta-lactams. | CARD (3.2.9) |
AMR Gene Family: CARD Annotation CARD Database Homepage
Chains | Accession | Gene Family | Drug Class | Resistance Machanism | Provenance Source (Version) |
---|---|---|---|---|---|
ARO:3001208 | methicillin resistant PBP2 | penam | antibiotic target replacement | CARD (3.2.9) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF03717 | Penicillin-binding Protein dimerisation domain (PBP_dimer) | Penicillin-binding Protein dimerisation domain | This domain is found at the N terminus of Class B High Molecular Weight Penicillin-Binding Proteins. Its function has not been precisely defined, but is strongly implicated in PBP polymerisation. The domain forms a largely disordered 'sugar tongs' st ... | Domain | |
PF00905 | Penicillin binding protein transpeptidase domain (Transpeptidase) | Penicillin binding protein transpeptidase domain | The active site serine (residue 337 in Swiss:P14677) is conserved in all members of this family. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR032710 | NTF2-like domain superfamily | Homologous Superfamily | |
IPR012338 | Beta-lactamase/transpeptidase-like | Homologous Superfamily | |
IPR050515 | Bacterial Transpeptidases and Beta-Lactamases | Family | |
IPR036138 | Penicillin-binding protein, dimerisation domain superfamily | Homologous Superfamily | |
IPR005311 | Penicillin-binding protein, dimerisation domain | Domain | |
IPR001460 | Penicillin-binding protein, transpeptidase | Domain | |
IPR007887 | NTF2-like N-terminal transpeptidase | Domain |