1MPY
STRUCTURE OF CATECHOL 2,3-DIOXYGENASE (METAPYROCATECHASE) FROM PSEUDOMONAS PUTIDA MT-2
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Extradiol dioxygenases | 8022553 | 4001093 | SCOP2 (2021-05-27) |
A | SCOP2 Family | Extradiol dioxygenases | 8022554 | 4001093 | SCOP2 (2021-05-27) |
A | SCOP2 Superfamily | Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 8034933 | 3000739 | SCOP2 (2021-05-27) |
A | SCOP2 Superfamily | Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 8034934 | 3000739 | SCOP2 (2021-05-27) |
B | SCOP2B Superfamily | Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 8034933 | 3000739 | SCOP2B (2021-05-27) |
B | SCOP2B Superfamily | Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 8034934 | 3000739 | SCOP2B (2021-05-27) |
C | SCOP2B Superfamily | Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 8034934 | 3000739 | SCOP2B (2021-05-27) |
C | SCOP2B Superfamily | Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 8034933 | 3000739 | SCOP2B (2021-05-27) |
D | SCOP2B Superfamily | Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 8034934 | 3000739 | SCOP2B (2021-05-27) |
D | SCOP2B Superfamily | Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 8034933 | 3000739 | SCOP2B (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | F_UNCLASSIFIED | e1mpyA1 | A: a+b two layers | X: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase (From Topology) | H: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase (From Topology) | T: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | F: F_UNCLASSIFIED | ECOD (1.6) |
A | PF00903 | e1mpyA3 | A: a+b two layers | X: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase (From Topology) | H: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase (From Topology) | T: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | F: PF00903 | ECOD (1.6) |
A | PF22247 | e1mpyA2 | A: a+b two layers | X: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase (From Topology) | H: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase (From Topology) | T: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | F: PF22247 | ECOD (1.6) |
B | F_UNCLASSIFIED | e1mpyB1 | A: a+b two layers | X: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase (From Topology) | H: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase (From Topology) | T: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | F: F_UNCLASSIFIED | ECOD (1.6) |
B | PF00903 | e1mpyB3 | A: a+b two layers | X: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase (From Topology) | H: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase (From Topology) | T: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | F: PF00903 | ECOD (1.6) |
B | PF22247 | e1mpyB2 | A: a+b two layers | X: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase (From Topology) | H: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase (From Topology) | T: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | F: PF22247 | ECOD (1.6) |
C | F_UNCLASSIFIED | e1mpyC1 | A: a+b two layers | X: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase (From Topology) | H: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase (From Topology) | T: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | F: F_UNCLASSIFIED | ECOD (1.6) |
C | PF00903 | e1mpyC3 | A: a+b two layers | X: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase (From Topology) | H: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase (From Topology) | T: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | F: PF00903 | ECOD (1.6) |
C | PF22247 | e1mpyC2 | A: a+b two layers | X: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase (From Topology) | H: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase (From Topology) | T: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | F: PF22247 | ECOD (1.6) |
D | F_UNCLASSIFIED | e1mpyD1 | A: a+b two layers | X: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase (From Topology) | H: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase (From Topology) | T: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | F: F_UNCLASSIFIED | ECOD (1.6) |
D | PF00903 | e1mpyD3 | A: a+b two layers | X: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase (From Topology) | H: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase (From Topology) | T: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | F: PF00903 | ECOD (1.6) |
D | PF22247 | e1mpyD2 | A: a+b two layers | X: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase (From Topology) | H: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase (From Topology) | T: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | F: PF22247 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.10.180.10 | Alpha Beta | Roll | 2,3-Dihydroxybiphenyl 1,2-Dioxygenase | domain 1 | CATH (4.3.0) |
B | 3.10.180.10 | Alpha Beta | Roll | 2,3-Dihydroxybiphenyl 1,2-Dioxygenase | domain 1 | CATH (4.3.0) |
C | 3.10.180.10 | Alpha Beta | Roll | 2,3-Dihydroxybiphenyl 1,2-Dioxygenase | domain 1 | CATH (4.3.0) |
D | 3.10.180.10 | Alpha Beta | Roll | 2,3-Dihydroxybiphenyl 1,2-Dioxygenase | domain 1 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF22247 | Catechol 2,3-dioxygenase-like N-terminal domain (Diox-like_N) | Catechol 2,3-dioxygenase-like N-terminal domain | This entry includes a group of bacterial proteins that function as 2,3-dioxigenases [1-5]. Thsi entry represents the N-terminal domain. | Domain | |
PF00903 | Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily (Glyoxalase) | Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR017624 | Catechol 2,3 dioxygenase | Family | |
IPR000486 | Extradiol ring-cleavage dioxygenase, class I /II | Conserved Site | |
IPR029068 | Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | Homologous Superfamily | |
IPR037523 | Vicinal oxygen chelate (VOC) domain | Domain | |
IPR004360 | Glyoxalase/fosfomycin resistance/dioxygenase domain | Domain |
Structure Motif Annotation: Mechanism and Catalytic Site Atlas M-CSA Database Homepage
Chains | Enzyme Name | Description | Catalytic Residues |
---|---|---|---|
catechol 2,3-dioxygenase M-CSA #34 | The catecholic dioxygenases catalyse the addition of molecular oxygen and subsequent ring cleavage into catecholic ring structures. Extradiol catecholic dioxygenases add oxygen into bonds other than the intradiol 4,5 bond. | Defined by 6 residues: HIS:A-153HIS:A-199HIS:A-214HIS:A-246TYR:A-255GLU:A-265 | EC: 1.13.11.2 (PDB Primary Data) |