1MJ1
FITTING THE TERNARY COMPLEX OF EF-Tu/tRNA/GTP AND RIBOSOMAL PROTEINS INTO A 13 A CRYO-EM MAP OF THE COLI 70S RIBOSOME
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
E [auth A] | d1mj1a_ | Low resolution protein structures | Ribosome and ribosomal fragments | Ribosome and ribosomal fragments | Ribosome complexes | 70S ribosome functional complex | (Escherichia coli ) [TaxId: 562 ], | SCOPe (2.08) |
F [auth O] | d1mj1o_ | Low resolution protein structures | Ribosome and ribosomal fragments | Ribosome and ribosomal fragments | Ribosome complexes | 70S ribosome functional complex | (Escherichia coli ) [TaxId: 562 ], | SCOPe (2.08) |
G [auth P] | d1mj1p_ | Low resolution protein structures | Ribosome and ribosomal fragments | Ribosome and ribosomal fragments | Ribosome complexes | 70S ribosome functional complex | (Escherichia coli ) [TaxId: 562 ], | SCOPe (2.08) |
H [auth L] | d1mj1l_ | Low resolution protein structures | Ribosome and ribosomal fragments | Ribosome and ribosomal fragments | Ribosome complexes | 70S ribosome functional complex | (Escherichia coli ) [TaxId: 562 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
E [auth A] | SCOP2B Superfamily | Ras-like P-loop GTPases | 8056500 | 3002022 | SCOP2B (2022-06-29) |
E [auth A] | SCOP2B Superfamily | EF-Tu post-G domain-like | 8056501 | 3002024 | SCOP2B (2022-06-29) |
E [auth A] | SCOP2B Superfamily | EF-Tu post-G domain-like | 8056503 | 3002024 | SCOP2B (2022-06-29) |
F [auth O] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8044021 | 3000135 | SCOP2B (2022-06-29) |
G [auth P] | SCOP2B Superfamily | S13-like H2TH domain | 8003708 | 3000053 | SCOP2B (2022-06-29) |
H [auth L] | SCOP2B Superfamily | Ribosomal protein L11, C-terminal domain | 8036651 | 3001186 | SCOP2B (2022-06-29) |
H [auth L] | SCOP2B Superfamily | Ribosomal L11/L12e N-terminal domain-like | 8035082 | 3000950 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
E [auth A] | GTP_EFTU_D2_1 | e1mj1A1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: GTP_EFTU_D2_1 | ECOD (1.6) |
E [auth A] | GTP_EFTU_D3 | e1mj1A2 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Aminomethyltransferase beta-barrel domain | F: GTP_EFTU_D3 | ECOD (1.6) |
E [auth A] | MnmE_helical_2nd | e1mj1A3 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: MnmE_helical_2nd | ECOD (1.6) |
F [auth O] | Ribosom_S12_S23 | e1mj1O1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: Ribosom_S12_S23 | ECOD (1.6) |
G [auth P] | Ribosomal_S13_1 | e1mj1P1 | A: alpha arrays | X: HhH/H2TH | H: H2TH (From Topology) | T: H2TH | F: Ribosomal_S13_1 | ECOD (1.6) |
H [auth L] | Ribosomal_L11 | e1mj1L1 | A: alpha arrays | X: HTH | H: HTH | T: Ribosomal protein L11, C-terminal domain | F: Ribosomal_L11 | ECOD (1.6) |
H [auth L] | Ribosomal_L11_N | e1mj1L2 | A: a+b two layers | X: Ribosomal protein L11/L12e N-terminal domain-like | H: Ribosomal protein L11/L12e N-terminal domain (From Topology) | T: Ribosomal protein L11/L12e N-terminal domain | F: Ribosomal_L11_N | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
E [auth A] | PF00009 | Elongation factor Tu GTP binding domain (GTP_EFTU) | Elongation factor Tu GTP binding domain | This domain contains a P-loop motif, also found in several other families such as Pfam:PF00071, Pfam:PF00025 and Pfam:PF00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains. | Domain |
E [auth A] | PF03143 | Elongation factor Tu C-terminal domain (GTP_EFTU_D3) | Elongation factor Tu C-terminal domain | Elongation factor Tu consists of three structural domains, this is the third domain. This domain adopts a beta barrel structure. This the third domain is involved in binding to both charged tRNA [1] and binding to EF-Ts Pfam:PF00889 [2]. | Domain |
E [auth A] | PF03144 | Elongation factor Tu domain 2 (GTP_EFTU_D2) | Elongation factor Tu domain 2 | Elongation factor Tu consists of three structural domains, this is the second domain. This domain adopts a beta barrel structure. This the second domain is involved in binding to charged tRNA [1]. This domain is also found in other proteins such as e ... | Domain |
F [auth O] | PF00164 | Ribosomal protein S12/S23 (Ribosom_S12_S23) | Ribosomal protein S12/S23 | - | Family |
G [auth P] | PF00416 | Ribosomal protein S13/S18 (Ribosomal_S13) | Ribosomal protein S13/S18 | - | Family |
H [auth L] | PF03946 | Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N) | Ribosomal protein L11, N-terminal domain | The N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain. | Domain |
H [auth L] | PF00298 | Ribosomal protein L11, RNA binding domain (Ribosomal_L11) | Ribosomal protein L11, RNA binding domain | - | Domain |