1L2W
Crystal Structure of the Yersinia Virulence Effector YopE Chaperone-binding Domain in Complex with its Secretion Chaperone, SycE
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Type III secretory system chaperone | 8096291 | 4003372 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Type III secretory system chaperone-like | 8096292 | 3000727 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | Type III secretory system chaperone-like | 8096292 | 3000727 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Type III secretory system chaperone-like | 8096292 | 3000727 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Type III secretory system chaperone-like | 8096292 | 3000727 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Type III secretory system chaperone-like | 8096292 | 3000727 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Type III secretory system chaperone-like | 8096292 | 3000727 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | Type III secretory system chaperone-like | 8096292 | 3000727 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | Type III secretory system chaperone-like | 8096292 | 3000727 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | CesT | e1l2wA1 | A: a+b two layers | X: Type III secretory system chaperone-like | H: Type III secretory system chaperone (From Topology) | T: Type III secretory system chaperone | F: CesT | ECOD (1.6) |
B | CesT | e1l2wB1 | A: a+b two layers | X: Type III secretory system chaperone-like | H: Type III secretory system chaperone (From Topology) | T: Type III secretory system chaperone | F: CesT | ECOD (1.6) |
C | CesT | e1l2wC1 | A: a+b two layers | X: Type III secretory system chaperone-like | H: Type III secretory system chaperone (From Topology) | T: Type III secretory system chaperone | F: CesT | ECOD (1.6) |
D | CesT | e1l2wD1 | A: a+b two layers | X: Type III secretory system chaperone-like | H: Type III secretory system chaperone (From Topology) | T: Type III secretory system chaperone | F: CesT | ECOD (1.6) |
E | CesT | e1l2wE1 | A: a+b two layers | X: Type III secretory system chaperone-like | H: Type III secretory system chaperone (From Topology) | T: Type III secretory system chaperone | F: CesT | ECOD (1.6) |
F | CesT | e1l2wF1 | A: a+b two layers | X: Type III secretory system chaperone-like | H: Type III secretory system chaperone (From Topology) | T: Type III secretory system chaperone | F: CesT | ECOD (1.6) |
G | CesT | e1l2wG1 | A: a+b two layers | X: Type III secretory system chaperone-like | H: Type III secretory system chaperone (From Topology) | T: Type III secretory system chaperone | F: CesT | ECOD (1.6) |
H | CesT | e1l2wH1 | A: a+b two layers | X: Type III secretory system chaperone-like | H: Type III secretory system chaperone (From Topology) | T: Type III secretory system chaperone | F: CesT | ECOD (1.6) |
I | YopE_N | e1l2wI1 | A: extended segments | X: Outer membrane virulence protein yopE (From Topology) | H: Outer membrane virulence protein yopE (From Topology) | T: Outer membrane virulence protein yopE | F: YopE_N | ECOD (1.6) |
J | YopE_N | e1l2wJ1 | A: extended segments | X: Outer membrane virulence protein yopE (From Topology) | H: Outer membrane virulence protein yopE (From Topology) | T: Outer membrane virulence protein yopE | F: YopE_N | ECOD (1.6) |
K | YopE_N | e1l2wK1 | A: extended segments | X: Outer membrane virulence protein yopE (From Topology) | H: Outer membrane virulence protein yopE (From Topology) | T: Outer membrane virulence protein yopE | F: YopE_N | ECOD (1.6) |
L | YopE_N | e1l2wL1 | A: extended segments | X: Outer membrane virulence protein yopE (From Topology) | H: Outer membrane virulence protein yopE (From Topology) | T: Outer membrane virulence protein yopE | F: YopE_N | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.1460.10 | Alpha Beta | 2-Layer Sandwich | Yope Regulator | Chain: A, | CATH (4.3.0) |
B | 3.30.1460.10 | Alpha Beta | 2-Layer Sandwich | Yope Regulator | Chain: A, | CATH (4.3.0) |
C | 3.30.1460.10 | Alpha Beta | 2-Layer Sandwich | Yope Regulator | Chain: A, | CATH (4.3.0) |
D | 3.30.1460.10 | Alpha Beta | 2-Layer Sandwich | Yope Regulator | Chain: A, | CATH (4.3.0) |
E | 3.30.1460.10 | Alpha Beta | 2-Layer Sandwich | Yope Regulator | Chain: A, | CATH (4.3.0) |
F | 3.30.1460.10 | Alpha Beta | 2-Layer Sandwich | Yope Regulator | Chain: A, | CATH (4.3.0) |
G | 3.30.1460.10 | Alpha Beta | 2-Layer Sandwich | Yope Regulator | Chain: A, | CATH (4.3.0) |
H | 3.30.1460.10 | Alpha Beta | 2-Layer Sandwich | Yope Regulator | Chain: A, | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF05932 | Tir chaperone protein (CesT) family (CesT) | Tir chaperone protein (CesT) family | This family consists of a number of bacterial sequences which are highly similar to the Tir chaperone protein in E. Coli. In many Gram-negative bacteria, a key indicator of pathogenic potential is the possession of a specialised type III secretion sy ... | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR010261 | Tir chaperone protein (CesT) family | Family | |
IPR005416 | Type III secretion chaperone SycE | Family | |
IPR014773 | Virulence factor YopE, GAP domain | Domain | |
IPR015110 | YopE, N-terminal domain | Domain | |
IPR003537 | Type III secretion system effector protein YopE-like | Family | |
IPR037168 | Virulence factor YopE, GAP domain superfamily | Homologous Superfamily |