1KYZ
Crystal Structure Analysis of Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase Ferulic Acid Complex
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Plant O-methyltransferase-like | 8054285 | 4000240 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | S-adenosyl-L-methionine-dependent methyltransferases | 8054286 | 3000118 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Winged helix DNA-binding domain | 8054287 | 3000034 | SCOP2 (2022-06-29) |
B [auth C] | SCOP2B Superfamily | S-adenosyl-L-methionine-dependent methyltransferases | 8054286 | 3000118 | SCOP2B (2022-06-29) |
B [auth C] | SCOP2B Superfamily | Winged helix DNA-binding domain | 8054287 | 3000034 | SCOP2B (2022-06-29) |
C [auth E] | SCOP2B Superfamily | S-adenosyl-L-methionine-dependent methyltransferases | 8054286 | 3000118 | SCOP2B (2022-06-29) |
C [auth E] | SCOP2B Superfamily | Winged helix DNA-binding domain | 8054287 | 3000034 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF08100 | e1kyzA1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF08100 | ECOD (1.6) |
A | PF00891 | e1kyzA2 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: PF00891 | ECOD (1.6) |
B [auth C] | PF08100 | e1kyzC1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF08100 | ECOD (1.6) |
B [auth C] | PF00891 | e1kyzC2 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: PF00891 | ECOD (1.6) |
C [auth E] | PF08100 | e1kyzE1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF08100 | ECOD (1.6) |
C [auth E] | PF00891 | e1kyzE2 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: PF00891 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.10.10.10 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | CATH (4.3.0) |
A | 3.40.50.150 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Vaccinia Virus protein VP39 | CATH (4.3.0) |
B [auth C] | 1.10.10.10 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | CATH (4.3.0) |
B [auth C] | 3.40.50.150 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Vaccinia Virus protein VP39 | CATH (4.3.0) |
C [auth E] | 1.10.10.10 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | CATH (4.3.0) |
C [auth E] | 3.40.50.150 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Vaccinia Virus protein VP39 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, B [auth C], C [auth E] | PF08100 | Dimerisation domain (Dimerisation) | Dimerisation domain | This domain is found at the N-terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins [1]. | Domain |
A, B [auth C], C [auth E] | PF00891 | O-methyltransferase domain (Methyltransf_2) | O-methyltransferase domain | This family includes a range of O-methyltransferases. These enzymes utilise S-adenosyl methionine. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
A, B [auth C], C [auth E] | Caffeic acid 3-O-methyltransferase | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, B [auth C], C [auth E] | IPR001077 | O-methyltransferase domain | Domain |
A, B [auth C], C [auth E] | IPR016461 | O-methyltransferase COMT-type | Family |
A, B [auth C], C [auth E] | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase superfamily | Homologous Superfamily |
A, B [auth C], C [auth E] | IPR012967 | Plant methyltransferase dimerisation domain | Domain |
A, B [auth C], C [auth E] | IPR036388 | Winged helix-like DNA-binding domain superfamily | Homologous Superfamily |
A, B [auth C], C [auth E] | IPR036390 | Winged helix DNA-binding domain superfamily | Homologous Superfamily |