1KSY
Crystal Structures of Two Intermediates in the Assembly of the Papillomavirus Replication Initiation Complex
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
D [auth A] | d1ksya_ | Alpha and beta proteins (a+b) | Origin of replication-binding domain, RBD-like | Origin of replication-binding domain, RBD-like | Replication initiation protein E1 | Replication initiation protein E1 | (Bovine papillomavirus ) [TaxId: 10571 ], | SCOPe (2.08) |
E [auth B] | d1ksyb1 | Alpha and beta proteins (a+b) | Origin of replication-binding domain, RBD-like | Origin of replication-binding domain, RBD-like | Replication initiation protein E1 | Replication initiation protein E1 | (Bovine papillomavirus ) [TaxId: 10571 ], | SCOPe (2.08) |
E [auth B] | d1ksyb2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | (Bovine papillomavirus ) [TaxId: 10571 ], | SCOPe (2.08) |
F [auth C] | d1ksyc_ | Alpha and beta proteins (a+b) | Origin of replication-binding domain, RBD-like | Origin of replication-binding domain, RBD-like | Replication initiation protein E1 | Replication initiation protein E1 | (Bovine papillomavirus ) [TaxId: 10571 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
D [auth A] | SCOP2B Superfamily | Origin of replication-binding domain, RBD-like | 8032862 | 3001937 | SCOP2B (2022-06-29) |
E [auth B] | SCOP2B Superfamily | Origin of replication-binding domain, RBD-like | 8032862 | 3001937 | SCOP2B (2022-06-29) |
F [auth C] | SCOP2B Superfamily | Origin of replication-binding domain, RBD-like | 8032862 | 3001937 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
D [auth A] | PPV_E1_C | e1ksyA1 | A: a+b two layers | X: Alpha-beta plaits | H: Origin of replication-binding domains | T: Origin of replication-binding domains | F: PPV_E1_C | ECOD (1.6) |
E [auth B] | PPV_E1_C | e1ksyB1 | A: a+b two layers | X: Alpha-beta plaits | H: Origin of replication-binding domains | T: Origin of replication-binding domains | F: PPV_E1_C | ECOD (1.6) |
F [auth C] | PPV_E1_C | e1ksyC1 | A: a+b two layers | X: Alpha-beta plaits | H: Origin of replication-binding domains | T: Origin of replication-binding domains | F: PPV_E1_C | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
D [auth A] | 3.40.1310.10 | Alpha Beta | 3-Layer(aba) Sandwich | Replication Protein E1 | Chain: A, | CATH (4.3.0) |
E [auth B] | 3.40.1310.10 | Alpha Beta | 3-Layer(aba) Sandwich | Replication Protein E1 | Chain: A, | CATH (4.3.0) |
F [auth C] | 3.40.1310.10 | Alpha Beta | 3-Layer(aba) Sandwich | Replication Protein E1 | Chain: A, | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
D [auth A], E [auth B], F [auth C] | PF20450 | Papillomavirus E1, DNA-binding domain (PPV_E1_DBD) | Papillomavirus E1, DNA-binding domain | This is the DNA-binding domain (DBD) of Papillomavirus E1 protein, a DNA helicase that is required for initiation of viral DNA replication. This protein forms a complex with the E2 protein Pfam:PF00508 at the origin of replication (ori) [1,2]. This d ... | Domain |