1KSX
Crystal Structures of Two Intermediates in the Assembly of the Papillomavirus Replication Initiation Complex
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
E [auth A] | SCOP2B Superfamily | Origin of replication-binding domain, RBD-like | 8032862 | 3001937 | SCOP2B (2022-06-29) |
F [auth B] | SCOP2B Superfamily | Origin of replication-binding domain, RBD-like | 8032862 | 3001937 | SCOP2B (2022-06-29) |
G [auth E] | SCOP2B Superfamily | Origin of replication-binding domain, RBD-like | 8032862 | 3001937 | SCOP2B (2022-06-29) |
H [auth F] | SCOP2B Superfamily | Origin of replication-binding domain, RBD-like | 8032862 | 3001937 | SCOP2B (2022-06-29) |
I | SCOP2B Superfamily | Origin of replication-binding domain, RBD-like | 8032862 | 3001937 | SCOP2B (2022-06-29) |
J | SCOP2B Superfamily | Origin of replication-binding domain, RBD-like | 8032862 | 3001937 | SCOP2B (2022-06-29) |
K [auth M] | SCOP2B Superfamily | Origin of replication-binding domain, RBD-like | 8032862 | 3001937 | SCOP2B (2022-06-29) |
L [auth N] | SCOP2B Superfamily | Origin of replication-binding domain, RBD-like | 8032862 | 3001937 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
E [auth A] | PPV_E1_C | e1ksxA1 | A: a+b two layers | X: Alpha-beta plaits | H: Origin of replication-binding domains | T: Origin of replication-binding domains | F: PPV_E1_C | ECOD (1.6) |
F [auth B] | PPV_E1_C | e1ksxB1 | A: a+b two layers | X: Alpha-beta plaits | H: Origin of replication-binding domains | T: Origin of replication-binding domains | F: PPV_E1_C | ECOD (1.6) |
G [auth E] | PPV_E1_C | e1ksxE1 | A: a+b two layers | X: Alpha-beta plaits | H: Origin of replication-binding domains | T: Origin of replication-binding domains | F: PPV_E1_C | ECOD (1.6) |
H [auth F] | PPV_E1_C | e1ksxF1 | A: a+b two layers | X: Alpha-beta plaits | H: Origin of replication-binding domains | T: Origin of replication-binding domains | F: PPV_E1_C | ECOD (1.6) |
I | PPV_E1_C | e1ksxI1 | A: a+b two layers | X: Alpha-beta plaits | H: Origin of replication-binding domains | T: Origin of replication-binding domains | F: PPV_E1_C | ECOD (1.6) |
J | PPV_E1_C | e1ksxJ1 | A: a+b two layers | X: Alpha-beta plaits | H: Origin of replication-binding domains | T: Origin of replication-binding domains | F: PPV_E1_C | ECOD (1.6) |
K [auth M] | PPV_E1_C | e1ksxM1 | A: a+b two layers | X: Alpha-beta plaits | H: Origin of replication-binding domains | T: Origin of replication-binding domains | F: PPV_E1_C | ECOD (1.6) |
L [auth N] | PPV_E1_C | e1ksxN1 | A: a+b two layers | X: Alpha-beta plaits | H: Origin of replication-binding domains | T: Origin of replication-binding domains | F: PPV_E1_C | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
E [auth A] | 3.40.1310.10 | Alpha Beta | 3-Layer(aba) Sandwich | Replication Protein E1 | Chain: A, | CATH (4.3.0) |
F [auth B] | 3.40.1310.10 | Alpha Beta | 3-Layer(aba) Sandwich | Replication Protein E1 | Chain: A, | CATH (4.3.0) |
G [auth E] | 3.40.1310.10 | Alpha Beta | 3-Layer(aba) Sandwich | Replication Protein E1 | Chain: A, | CATH (4.3.0) |
H [auth F] | 3.40.1310.10 | Alpha Beta | 3-Layer(aba) Sandwich | Replication Protein E1 | Chain: A, | CATH (4.3.0) |
I | 3.40.1310.10 | Alpha Beta | 3-Layer(aba) Sandwich | Replication Protein E1 | Chain: A, | CATH (4.3.0) |
J | 3.40.1310.10 | Alpha Beta | 3-Layer(aba) Sandwich | Replication Protein E1 | Chain: A, | CATH (4.3.0) |
K [auth M] | 3.40.1310.10 | Alpha Beta | 3-Layer(aba) Sandwich | Replication Protein E1 | Chain: A, | CATH (4.3.0) |
L [auth N] | 3.40.1310.10 | Alpha Beta | 3-Layer(aba) Sandwich | Replication Protein E1 | Chain: A, | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF20450 | Papillomavirus E1, DNA-binding domain (PPV_E1_DBD) | Papillomavirus E1, DNA-binding domain | This is the DNA-binding domain (DBD) of Papillomavirus E1 protein, a DNA helicase that is required for initiation of viral DNA replication. This protein forms a complex with the E2 protein Pfam:PF00508 at the origin of replication (ori) [1,2]. This d ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR046935 | DNA helicase E1, DNA-binding domain superfamily, papillomavirus | Homologous Superfamily | |
IPR046832 | DNA helicase E1, DNA-binding domain, papillomavirus | Domain | |
IPR001177 | DNA helicase E1, C-terminal, Papillomavirus | Domain | |
IPR014000 | DNA helicase E1, N-terminal, Papillomavirus | Domain | |
IPR037102 | Zinc finger, large T-antigen D1 domain superfamily | Homologous Superfamily | |
IPR016393 | Replication protein E1, papillomavirus | Family | |
IPR014015 | Helicase, superfamily 3, DNA virus | Domain | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily |