1KSK
STRUCTURE OF RSUA
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1kska3 | Alpha and beta proteins (a+b) | Alpha-L RNA-binding motif | Alpha-L RNA-binding motif | Pseudouridine synthase RsuA N-terminal domain | Pseudouridine synthase RsuA N-terminal domain | (Escherichia coli ) [TaxId: 562 ], | SCOPe (2.08) |
A | d1kska4 | Alpha and beta proteins (a+b) | Pseudouridine synthase | Pseudouridine synthase | Pseudouridine synthase RsuA/RluD | Ribosomal small subunit pseudouridine 516 synthase RsuA | (Escherichia coli ) [TaxId: 562 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Pseudouridine synthase RsuA/RluD | 8023222 | 4002679 | SCOP2 (2022-06-29) |
A | SCOP2 Family | Pseudouridine synthase RsuA N-terminal domain | 8028233 | 4002691 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Pseudouridine synthase | 8035602 | 3001360 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Alpha-L RNA-binding motif | 8040612 | 3001473 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | S4_1 | e1kskA2 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Alpha-L RNA-binding motif | F: S4_1 | ECOD (1.6) |
A | PseudoU_synth_2 | e1kskA1 | A: a+b two layers | X: Alpha-beta plaits | H: Pseudouridine synthase (From Topology) | T: Pseudouridine synthase | F: PseudoU_synth_2 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.10.290.10 | Alpha Beta | Roll | Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region | Chain A | CATH (4.3.0) |
A | 3.30.2350.10 | Alpha Beta | 2-Layer Sandwich | Pseudouridine synthase | Pseudouridine synthase | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00849 | RNA pseudouridylate synthase (PseudoU_synth_2) | RNA pseudouridylate synthase | - | Family | |
PF01479 | S4 domain (S4) | S4 domain | The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR020103 | Pseudouridine synthase, catalytic domain superfamily | Homologous Superfamily | |
IPR002942 | RNA-binding S4 domain | Domain | |
IPR020094 | Pseudouridine synthase TruA/RsuA/RluB/E/F, N-terminal | Homologous Superfamily | |
IPR050343 | Ribosomal RNA Pseudouridine Synthase RsuA | Family | |
IPR000748 | Pseudouridine synthase, RsuA/RluB/E/F | Family | |
IPR036986 | RNA-binding S4 domain superfamily | Homologous Superfamily | |
IPR006145 | Pseudouridine synthase, RsuA/RluA-like | Domain | |
IPR018496 | Pseudouridine synthase, RsuA/RluB/E/F, conserved site | Conserved Site | |
IPR042092 | Pseudouridine synthase, RsuA/RluB/E/F, catalytic domain | Homologous Superfamily |