Annotations: 1KMD

SOLUTION STRUCTURE OF THE VAM7P PX DOMAIN

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1kmda_	Alpha and beta proteins (a+b)	PX domain	PX domain	PX domain	Vam7p	baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	PX domain	8028095	4003533	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	PX domain	8040474	3001006	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PX	e1kmdA1	A: a+b two layers	X: PX domain	H: PX domain	T: PX domain	F: PX	ECOD (v294.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.30.1520.10	Alpha Beta	2-Layer Sandwich	PX Domain	Phox-like domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00787	PX domain (PX)	PX domain	PX domains bind to phosphoinositides.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Vacuolar morphogenesis protein VAM7	protein binding binding SNARE binding ion binding anion binding phosphatidic acid binding phospholipid binding lipid binding small molecule binding phosphatidylinositol-3-phosphate binding phosphatidylinositol phosphate binding fusogenic activity SNAP receptor activity protein-macromolecule adaptor activity protein binding binding SNARE binding ion binding anion binding phosphatidic acid binding phospholipid binding lipid binding small molecule binding phosphatidylinositol-3-phosphate binding phosphatidylinositol phosphate binding fusogenic activity SNAP receptor activity protein-macromolecule adaptor activity molecular adaptor activity	membrane organization catabolic process transport macroautophagy membrane fusion organelle membrane fusion autophagy establishment of localization vesicle-mediated transport vesicle organization cellular component organization organelle fusion localization organelle organization autophagosome-lysosome fusion membrane organization catabolic process transport macroautophagy membrane fusion organelle membrane fusion autophagy establishment of localization vesicle-mediated transport vesicle organization cellular component organization organelle fusion localization organelle organization autophagosome-lysosome fusion cellular process metabolic process cellular component organization or biogenesis vesicle fusion process utilizing autophagic mechanism cellular localization establishment of protein localization intracellular transport protein transport establishment of localization in cell macromolecule localization intracellular protein localization intracellular protein transport inorganic ion homeostasis intracellular calcium ion homeostasis homeostatic process calcium ion homeostasis cellular homeostasis chemical homeostasis vacuolar calcium ion homeostasis intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis protein targeting establishment of protein localization to vacuole protein localization to vacuole cytoplasm to vacuole targeting by the Cvt pathway establishment of protein localization to organelle protein localization to organelle vacuolar transport protein targeting to vacuole piecemeal microautophagy of the nucleus microautophagy nucleophagy vacuole fusion vacuole organization vacuole fusion, non-autophagic organelle localization by membrane tethering organelle localization vesicle docking membrane docking amphisome-lysosome fusion	cellular anatomical structure endomembrane system vacuolar membrane membrane-bounded organelle storage vacuole intracellular anatomical structure membrane lytic vacuole vacuole intracellular membrane-bounded organelle fungal-type vacuole intracellular organelle lytic vacuole membrane bounding membrane of organelle cellular anatomical structure endomembrane system vacuolar membrane membrane-bounded organelle storage vacuole intracellular anatomical structure membrane lytic vacuole vacuole intracellular membrane-bounded organelle fungal-type vacuole intracellular organelle lytic vacuole membrane bounding membrane of organelle organelle cytoplasm organelle membrane fungal-type vacuole membrane autophagosome membrane autophagosome SNARE complex protein-containing complex membrane protein complex phagophore assembly site

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR001683	Phox homology	Domain
A	IPR036871	PX domain superfamily	Homologous Superfamily
A	IPR000727	Target SNARE coiled-coil homology domain	Domain

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