1KKE
Crystal Structure of Reovirus Attachment Protein Sigma1 Trimer
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Reovirus attachment protein sigma 1 head domain | 8025920 | 4003037 | SCOP2 (2022-06-29) |
A | SCOP2 Family | Reovirus attachment protein sigma 1 | 8025921 | 4003157 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Virus attachment protein globular domain | 8038299 | 3001376 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Fibre shaft of virus attachment proteins | 8038300 | 3001872 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | Virus attachment protein globular domain | 8038299 | 3001376 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Fibre shaft of virus attachment proteins | 8038300 | 3001872 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Virus attachment protein globular domain | 8038299 | 3001376 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Fibre shaft of virus attachment proteins | 8038300 | 3001872 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Reo_sigma1_C | e1kkeA1 | A: beta sandwiches | X: Domain in virus attachment proteins (From Topology) | H: Domain in virus attachment proteins (From Topology) | T: Domain in virus attachment proteins | F: Reo_sigma1_C | ECOD (1.6) |
A | e1kkeA2 | A: beta duplicates or obligate multimers | X: Triple beta-spiral (From Topology) | H: Triple beta-spiral (From Topology) | T: Triple beta-spiral | F: | ECOD (1.6) | |
B | Reo_sigma1_C | e1kkeB1 | A: beta sandwiches | X: Domain in virus attachment proteins (From Topology) | H: Domain in virus attachment proteins (From Topology) | T: Domain in virus attachment proteins | F: Reo_sigma1_C | ECOD (1.6) |
B | e1kkeB2 | A: beta duplicates or obligate multimers | X: Triple beta-spiral (From Topology) | H: Triple beta-spiral (From Topology) | T: Triple beta-spiral | F: | ECOD (1.6) | |
C | Reo_sigma1_C | e1kkeC1 | A: beta sandwiches | X: Domain in virus attachment proteins (From Topology) | H: Domain in virus attachment proteins (From Topology) | T: Domain in virus attachment proteins | F: Reo_sigma1_C | ECOD (1.6) |
C | e1kkeC2 | A: beta duplicates or obligate multimers | X: Triple beta-spiral (From Topology) | H: Triple beta-spiral (From Topology) | T: Triple beta-spiral | F: | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.10.25.20 | Mainly Beta | Ribbon | Laminin | reovirus attachment protein sigma1 | CATH (4.3.0) |
A | 2.60.90.20 | Mainly Beta | Sandwich | Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) | Virus attachment protein , globular domain | CATH (4.3.0) |
B | 2.10.25.20 | Mainly Beta | Ribbon | Laminin | reovirus attachment protein sigma1 | CATH (4.3.0) |
B | 2.60.90.20 | Mainly Beta | Sandwich | Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) | Virus attachment protein , globular domain | CATH (4.3.0) |
C | 2.10.25.20 | Mainly Beta | Ribbon | Laminin | reovirus attachment protein sigma1 | CATH (4.3.0) |
C | 2.60.90.20 | Mainly Beta | Sandwich | Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) | Virus attachment protein , globular domain | CATH (4.3.0) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR009013 | Attachment protein shaft domain superfamily | Homologous Superfamily | |
IPR002592 | Outer capsid protein sigma-1, C-terminal domain | Domain | |
IPR008982 | Adenovirus pIV-like, attachment domain | Homologous Superfamily |