1JJC
Crystal structure at 2.6A resolution of phenylalanyl-tRNA synthetase complexed with phenylalanyl-adenylate in the presence of manganese
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Class II aaRS and biotin synthetases | 8037041 | 3000058 | SCOP2B (2021-05-27) |
B | SCOP2 Family | Anticodon-binding domain of PheRS | 8024668 | 4001333 | SCOP2 (2021-05-27) |
B | SCOP2 Family | Class II aminoacyl-tRNA synthetase (aaRS)-like catalytic domain | 8024669 | 4001782 | SCOP2 (2021-05-27) |
B | SCOP2 Family | Myf domain | 8024666 | 4001906 | SCOP2 (2021-05-27) |
B | SCOP2 Family | Domains B1 and B5 of PheRS-beta PheT | 8024663 | 4000760 | SCOP2 (2021-05-27) |
B | SCOP2 Family | Domains B1 and B5 of PheRS-beta PheT | 8024664 | 4000760 | SCOP2 (2021-05-27) |
B | SCOP2 Family | B3/B4 domain of PheRS PheT | 8024670 | 4002012 | SCOP2 (2021-05-27) |
B | SCOP2 Superfamily | Anticodon-binding domain of PheRS | 8037047 | 3001309 | SCOP2 (2021-05-27) |
B | SCOP2 Superfamily | Class II aaRS and biotin synthetases | 8037048 | 3000058 | SCOP2 (2021-05-27) |
B | SCOP2 Superfamily | Nucleic acid-binding proteins | 8037045 | 3000135 | SCOP2 (2021-05-27) |
B | SCOP2 Superfamily | Putative DNA-binding domain | 8037042 | 3000158 | SCOP2 (2021-05-27) |
B | SCOP2 Superfamily | Putative DNA-binding domain | 8037043 | 3000158 | SCOP2 (2021-05-27) |
B | SCOP2 Superfamily | PheT/TilS domain | 8037049 | 3000688 | SCOP2 (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF01409 | e1jjcA1 | A: a+b three layers | X: Class II aaRS and biotin synthetases (From Topology) | H: Class II aaRS and biotin synthetases (From Topology) | T: Class II aaRS and biotin synthetases | F: PF01409 | ECOD (1.6) |
B | PF01588 | e1jjcB1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF01588 | ECOD (1.6) |
B | PF03483 | e1jjcB2 | A: beta complex topology | X: PheT/TilS domain (From Topology) | H: PheT/TilS domain (From Topology) | T: PheT/TilS domain | F: PF03483 | ECOD (1.6) |
B | F_UNCLASSIFIED | e1jjcB3 | A: alpha arrays | X: HTH | H: HTH | T: Putative DNA-binding domain | F: F_UNCLASSIFIED | ECOD (1.6) |
B | PF03484 | e1jjcB4 | A: alpha arrays | X: HTH | H: HTH | T: Putative DNA-binding domain | F: PF03484 | ECOD (1.6) |
B | PF03147 | e1jjcB5 | A: a+b two layers | X: Alpha-beta plaits | H: Anticodon-binding domain of PheRS (From Topology) | T: Anticodon-binding domain of PheRS | F: PF03147 | ECOD (1.6) |
B | PF17759 | e1jjcB6 | A: a+b three layers | X: Class II aaRS and biotin synthetases (From Topology) | H: Class II aaRS and biotin synthetases (From Topology) | T: Class II aaRS and biotin synthetases | F: PF17759 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.930.10 | Alpha Beta | 2-Layer Sandwich | BirA Bifunctional Protein | domain 2 | CATH (4.3.0) |
B | 3.30.56.10 | Alpha Beta | 2-Layer Sandwich | Phenylalanyl-tRNA Synthetase | Chain B, domain 1 | CATH (4.3.0) |
B | 2.40.50.140 | Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | Nucleic acid-binding proteins | CATH (4.3.0) |
B | 3.50.40.10 | Alpha Beta | 3-Layer(bba) Sandwich | Phenylalanyl-tRNA Synthetase | Chain B, domain 3 | CATH (4.3.0) |
B | 3.30.930.10 | Alpha Beta | 2-Layer Sandwich | BirA Bifunctional Protein | domain 2 | CATH (4.3.0) |
B | 3.30.70.380 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | Ferrodoxin-fold anticodon-binding domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01409 | tRNA synthetases class II core domain (F) (tRNA-synt_2d) | tRNA synthetases class II core domain (F) | Other tRNA synthetase sub-families are too dissimilar to be included. This family includes only phenylalanyl-tRNA synthetases. This is the core catalytic domain. | Domain | |
PF03483 | B3/4 domain (B3_4) | B3/4 domain | This domain is found in tRNA synthetase beta subunits as well as in some non tRNA synthetase proteins. | Domain | |
PF03484 | tRNA synthetase B5 domain (B5) | tRNA synthetase B5 domain | This domain is found in phenylalanine-tRNA synthetase beta subunits. | Domain | |
PF03147 | Ferredoxin-fold anticodon binding domain (FDX-ACB) | Ferredoxin-fold anticodon binding domain | This is the anticodon binding domain found in some phenylalanyl tRNA synthetases. The domain has a ferredoxin fold [1,2]. | Domain | |
PF17759 | Phenylalanyl tRNA synthetase beta chain CLM domain (tRNA_synthFbeta) | Phenylalanyl tRNA synthetase beta chain CLM domain | This domain corresponds to the catalytic like domain (CLM) in the beta chain of phe tRNA synthetase [1]. | Domain |