CRYSTAL STRUCTURE DETERMINATION OF ASPARTATE RACEMASE FROM AN ARCHAEA
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B | d1jflb1 | Alpha and beta proteins (a/b) | ATC-like | Aspartate/glutamate racemase | Aspartate/glutamate racemase | Aspartate racemase | (Pyrococcus horikoshii OT3 ) [TaxId: 70601 ], | SCOPe (2.08) |
| A | d1jfla1 | Alpha and beta proteins (a/b) | ATC-like | Aspartate/glutamate racemase | Aspartate/glutamate racemase | Aspartate racemase | (Pyrococcus horikoshii OT3 ) [TaxId: 70601 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| B | SCOP2B Superfamily | Aspartate/glutamate racemase | 8039894 | 3001414 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | Aspartate/glutamate racemase | 8039893 | 3001414 | SCOP2B (2022-06-29) |
| A | SCOP2 Family | Aspartate/glutamate racemase | 8027514 | 4000796 | SCOP2 (2022-06-29) |
| A | SCOP2 Family | Aspartate/glutamate racemase | 8027515 | 4000796 | SCOP2 (2022-06-29) |
| A | SCOP2 Superfamily | Aspartate/glutamate racemase | 8039893 | 3001414 | SCOP2 (2022-06-29) |
| A | SCOP2 Superfamily | Aspartate/glutamate racemase | 8039894 | 3001414 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B | Pribosyltran | e1jflB1 | A: a/b three-layered sandwiches | X: HTH | H: HTH | T: winged helix domain | F: Pribosyltran | ECOD (v294.1) |
| A | Asp_Glu_race | e1jflA1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: ATC-like | F: Asp_Glu_race | ECOD (v294.1) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| B | 3.40.50.1860 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | CATH (4.3.0) | |
| A | 3.40.50.1860 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | CATH (4.3.0) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| ASPARTATE RACEMASE | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR018187 | Asp/Glu racemase, active site 1 | Active Site | |
| IPR001920 | Asp/Glu racemase | Homologous Superfamily | |
| IPR004380 | Aspartate racemase | Family | |
| IPR015942 | Asp/Glu/hydantoin racemase | Family |
Structure Motif Annotation: Mechanism and Catalytic Site Atlas M-CSA Database Homepage
| Chains | Enzyme Name | Description | Catalytic Residues |
|---|---|---|---|
| aspartate racemase (CC-type) M-CSA #335 | Although L-enantiomers of amino acids are predominant in living organisms, D-enantiomers are distributed widely in bacteria, archaea and mammalian tissue. D-aspartate (D-Asp) is one of the most abundant D-enantiomers. | Defined by 6 residues: ARG:A-48CYS:A-82THR:A-84THR:A-124LYS:A-164CYS:A-194 | EC: 5.1.1.13 (PDB Primary Data) |














